DPL0362, DPL0362 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0362
AliasDPL362
Genbank IDGQ394967
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Delta Opal
Source SequenceGQ394967
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0362_F: CAACTCTCTTCAGGGTTCTAATGG
Primer 2DPL0362_R: AAGATACGGGAAGTTGAGTCTGAG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394967
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:53042276..53042457 -
A07chromosomeA07:88771792..88771979 -
CM018221.1chromosomeCM018221.1:51122719..51122900 -
CM018208.1chromosomeCM018208.1:88745213..88745400 -
D5_07chromosomeD5_07:46501050..46501237 -
KI_07chromosomeKI_07:3278736..3278917 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:92089291..92089469 -
D10_07chromosomeD10_07:5033836..5034017 +
CM016620.1chromosomeCM016620.1:7737590..7737769 +
scaffold56.1supercontigscaffold56.1:307521..307702 -
scaffold4985.1supercontigscaffold4985.1:4469..4656 -
D07chromosomeD07:50236056..50236237 -
A07chromosomeA07:73272645..73272832 -
Ghir_D07chromosomeGhir_D07:54335210..54335391 -
Ghir_A07chromosomeGhir_A07:92606078..92606256 -
D07chromosomeD07:53579500..53579681 -
A07chromosomeA07:91630728..91630915 -
D07chromosomeD07:53875704..53875885 -
A07chromosomeA07:91592736..91592923 -
D07chromosomeD07:50347526..50347707 -
A07chromosomeA07:88084795..88084982 -
Dt07chromosomeDt07:55276530..55276717 -
Dt07chromosomeDt07:55274623..55274810 -
Dt07chromosomeDt07:55283714..55283895 -
scaffold13089supercontigscaffold13089:8597..8784 +
scaffold11989supercontigscaffold11989:210776..210963 -
scaffold11989supercontigscaffold11989:208869..209056 -
scaffold11989supercontigscaffold11989:217960..218141 -
Gbar_D07chromosomeGbar_D07:51488768..51488949 -
D07chromosomeD07:52199170..52199351 -
A07chromosomeA07:90068843..90069030 -
CM017629.1chromosomeCM017629.1:51968208..51968392 -
CM017616.1chromosomeCM017616.1:91689053..91689240 -
CM017655.1chromosomeCM017655.1:53000908..53001089 -
CM017642.1chromosomeCM017642.1:94673982..94674178 -
CM017707.1chromosomeCM017707.1:52114747..52114928 -
CM017694.1chromosomeCM017694.1:90035352..90035533 -
D07chromosomeD07:54427630..54427811 -
A07chromosomeA07:93680985..93681172 -
Chr07chromosomeChr07:95394925..95395103 -
Chr07chromosomeChr07:96777114..96777292 -
Chr07chromosomeChr07:4972569..4972756 +
B_07chromosomeB_07:77686908..77687086 -
Chr01chromosomeChr01:50944597..50944778 -
chr01chromosomechr01:38977483..38977661 -
Chr_01chromosomeChr_01:33807579..33807757 -
Chr01chromosomeChr01:50693960..50694138 -
Chr01chromosomeChr01:35633790..35633971 -
Chr01chromosomeChr01:28107187..28107368 -
Chr01chromosomeChr01:34788499..34788683 -
E07chromosomeE07:7189801..7189979 +
F07chromosomeF07:77607708..77607883 -
Chr07chromosomeChr07:152739943..152740118 -
Germplasm
Stock NameType
Delta Opalaccession
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394967GQ394967Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A96.8DPL0362View
2LMY22 x LY343, RIL (2016)chr.7N/A25.2DPL0362View
3LMY22 x LY343, RIL (2020)A07N/A20.75DPL0362View
4901-001 x sGK156, F2 (2019)AD_ch07_At.07N/A0DPL0362aView
5901-001 x sGK156, F2 (2019)AD_ch07_At.07N/A20.95DPL0362bView
Sequence
>DPL0362 ID=DPL0362; Name=DPL0362; organism=Gossypium hirsutum; type=genetic_marker; length=188bp
CAACTCTCTTCAGGGTTCTAATGGGTCACAGCAGCAAGCATATGCCATGC
GCCTTGCTAAAGAAAGGCAGAGGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TCTCATATGCATCGGCAACATCAAAAGTTTGCTGTATCTAATACTTTGAA
GCCACATGTCCGACCTCAGACTCAACTTCCCGTATCTT