DPL0343, DPL0343 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0343
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0343_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0343_F: GCACCCTGATAAGAAGAATGTTGT
Primer 2DPL0343_R: TCTCTTCTTCTGCTTCACTATCCC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:63328077..63328266 -
A12chromosomeA12:102488664..102488844 -
CM018226.1chromosomeCM018226.1:59291226..59291418 -
CM018213.1chromosomeCM018213.1:98797320..98797518 -
D5_12chromosomeD5_12:499900..500086 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:496728..496914 +
D10_12chromosomeD10_12:54178425..54178605 -
CM016625.1chromosomeCM016625.1:677896..678079 +
scaffold506.1supercontigscaffold506.1:902048..902228 -
D12chromosomeD12:58645205..58645394 -
A12chromosomeA12:86998298..86998478 -
Ghir_D12chromosomeGhir_D12:62125259..62125448 -
Ghir_A12chromosomeGhir_A12:107126107..107126287 -
D12chromosomeD12:61226611..61226800 -
A12chromosomeA12:107058021..107058201 -
D12chromosomeD12:62185002..62185191 -
A12chromosomeA12:105274898..105275078 -
D12chromosomeD12:60045945..60046134 -
A12chromosomeA12:102205746..102205926 -
Dt12chromosomeDt12:62808541..62808733 -
At12chromosomeAt12:92846948..92847146 -
At12chromosomeAt12:92832969..92833167 -
scaffold9223supercontigscaffold9223:193938..194130 -
scaffold8759supercontigscaffold8759:124018..124216 -
scaffold8759supercontigscaffold8759:110039..110237 -
Gbar_D12chromosomeGbar_D12:58528520..58528712 -
Gbar_A12chromosomeGbar_A12:101610213..101610411 -
D12chromosomeD12:60283656..60283848 -
A12chromosomeA12:101125068..101125266 -
CM017634.1chromosomeCM017634.1:60229793..60229982 -
CM017621.1chromosomeCM017621.1:102367653..102367833 -
CM017660.1chromosomeCM017660.1:63390584..63390773 -
CM017647.1chromosomeCM017647.1:106257480..106257669 -
CM017712.1chromosomeCM017712.1:60846598..60846787 -
CM017699.1chromosomeCM017699.1:101477099..101477294 -
D12chromosomeD12:62748550..62748739 -
A12chromosomeA12:108882515..108882695 -
Chr12chromosomeChr12:109839418..109839604 -
Chr12chromosomeChr12:116737845..116738031 -
Chr12chromosomeChr12:57237261..57237447 -
Chr08chromosomeChr08:57664341..57664530 -
chr08chromosomechr08:45256283..45256463 -
Chr_08chromosomeChr_08:42842847..42843185 -
Chr08chromosomeChr08:59305240..59305429 -
Chr08chromosomeChr08:41807005..41807188 -
Chr08chromosomeChr08:33124766..33124955 -
Chr08chromosomeChr08:40713061..40713244 -
E12chromosomeE12:114021129..114021306 -
F12chromosomeF12:90815540..90815726 -
Chr12chromosomeChr12:173928601..173928781 -
Chr08chromosomeDPL0343:1..799 .
Chr08:56615987..56616790 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0343_origDPL0343_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch26_Dt.12N/A115.8DPL0343View
2Yumian-1 x 7235, RIL (2015)AD_ch26_Dt.12N/A3.2DPL0343View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A171.2DPL0343View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A7.8DPL0343View
5LMY28 x XLZ24, RIL (2018)AD_ch26_Dt.12N/A13.22DPL0343View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch26_Dt.12N/A64.2MON_DPL0343View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A161.62DPL0343View
Sequence
>DPL0343 ID=DPL0343; Name=DPL0343; organism=Gossypium hirsutum; type=genetic_marker; length=181bp
GCACCCTGATAAGAAGAATGTTGTTGTGACGTTTAATACGCCGAAAGATT
CGGAAAATGATGATGAAGAAGAAGATGATGATGATGATGATGGGTACACT
TCTTCGCAATCCAGCGTGGCGGGTCGTGGTGCTTTAGCGGAAAATGTGGA
AACGAGGGGGATAGTGAAGCAGAAGAAGAGA