DPL0326, DPL0326 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0326
Genbank IDGQ394953
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394953
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0326_F: CTGCAGCTATATTCGGGTTACACT
Primer 2DPL0326_R: GTTGGACCTACAACATTCACCATA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394953
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:14874365..14874716 -
A01chromosomeA01:19820759..19820962 -
CM018215.1chromosomeCM018215.1:14645405..14645605 -
CM018202.1chromosomeCM018202.1:18070313..18070517 -
D5_01chromosomeD5_01:14053582..14053949 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:20116489..20116850 -
D10_01chromosomeD10_01:46144088..46144292 +
CM016614.1chromosomeCM016614.1:27184641..27184840 -
Dt_chr2chromosomeDt_chr2:42475992..42476343 -
At_chr2chromosomeAt_chr2:16748869..16749075 -
D01chromosomeD01:13736885..13737236 -
A01chromosomeA01:18494584..18494790 -
Ghir_D01chromosomeGhir_D01:15157887..15158238 -
Ghir_A01chromosomeGhir_A01:19084385..19084591 -
D01chromosomeD01:14830223..14830574 -
A01chromosomeA01:18509665..18509871 -
D01chromosomeD01:14684034..14684385 -
A01chromosomeA01:18964030..18964236 -
D01chromosomeD01:15051077..15051428 -
A01chromosomeA01:19564892..19565098 -
scaffold12297supercontigscaffold12297:95625..95825 +
scaffold14722supercontigscaffold14722:97622..97826 -
Gbar_D01chromosomeGbar_D01:15243777..15243977 -
Gbar_A01chromosomeGbar_A01:18217754..18217958 -
D01chromosomeD01:15020568..15020926 -
A01chromosomeA01:18054093..18054297 -
CM017623.1chromosomeCM017623.1:14914599..14914950 -
CM017610.1chromosomeCM017610.1:19518209..19518565 -
CM017636.1chromosomeCM017636.1:18687487..18687838 -
CM017701.1chromosomeCM017701.1:15034785..15034985 -
CM017688.1chromosomeCM017688.1:18264249..18264608 -
D01chromosomeD01:15402413..15402764 -
A01chromosomeA01:19043411..19043617 -
Chr01chromosomeChr01:19129386..19129744 -
Chr01chromosomeChr01:20395829..20396193 -
Chr01chromosomeChr01:13936484..13936848 -
B_01chromosomeB_01:20689247..20689612 -
Chr02chromosomeChr02:14930116..14930298 -
chr02chromosomechr02:13151820..13152012 -
Chr_02chromosomeChr_02:11433705..11433985 -
Chr02chromosomeChr02:14714092..14714281 -
Chr02chromosomeChr02:14125578..14125936 -
Chr02chromosomeChr02:9922440..9922810 -
Chr02chromosomeChr02:12771052..12771356 -
F01chromosomeF01:16548539..16548730 -
Chr01chromosomeChr01:164929614..164929805 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394953GQ394953Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A58.8DPL0326View
Sequence
>DPL0326 ID=DPL0326; Name=DPL0326; organism=Gossypium hirsutum; type=genetic_marker; length=204bp
CTGCAGCTATATTCGGGTTACACTTACTACATACATGATGATGATGATGA
TGATGATGATGATGATGATACATTTACAAATGCTAGCCACCCACCCAAAC
TCCCCCATTTCTATCATCACACTGACAGTGACTGATATATACTGTTGAGT
TGGGAAAAAAATAATATTATTAACAGAAAATATGGTGAATGTTGTAGGTC
CAAC