DPL0308, DPL0308 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0308
Genbank IDGQ394945
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394945
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0308_F: GGATAACATATCTGCTGTTGACGA
Primer 2DPL0308_R: GTACGTTGGGTGCTTTAACACATA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394945
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:45457984..45458122 +
A13chromosomeA13:82820692..82820821 +
CM018227.1chromosomeCM018227.1:41828733..41828877 +
D5_13chromosomeD5_13:40711749..40711881 +
D10_13chromosomeD10_13:43035924..43036065 +
Dt_chr13chromosomeDt_chr13:30001510..30001648 +
At_chr13chromosomeAt_chr13:13441287..13441428 -
D13chromosomeD13:41326127..41326265 +
A13chromosomeA13:59521603..59521732 +
Ghir_D13chromosomeGhir_D13:44711108..44711246 +
Ghir_A13chromosomeGhir_A13:86655068..86655197 +
D13chromosomeD13:45955569..45955707 +
A13chromosomeA13:89670316..89670445 +
D13chromosomeD13:44849106..44849244 +
A13chromosomeA13:87711700..87711841 +
D13chromosomeD13:41770126..41770264 +
A13chromosomeA13:86384445..86384586 +
Dt13chromosomeDt13:43226033..43226177 +
scaffold15668supercontigscaffold15668:116988..117132 +
scaffold633supercontigscaffold633:1730..2135 -
scaffold633supercontigscaffold633:3325..3451 -
Gbar_D13chromosomeGbar_D13:41554462..41554606 +
Gbar_A13chromosomeGbar_A13:88599051..88599177 +
D13chromosomeD13:42946103..42946247 +
CM017635.1chromosomeCM017635.1:42742282..42742411 +
CM017661.1chromosomeCM017661.1:45617375..45617513 +
CM017713.1chromosomeCM017713.1:42857156..42857300 +
CM017700.1chromosomeCM017700.1:89598948..89599077 +
D13chromosomeD13:45851591..45851729 +
A13chromosomeA13:89931468..89931597 +
Chr13chromosomeChr13:94848154..94848298 +
Chr13chromosomeChr13:40753330..40753462 +
B_13chromosomeB_13:25124814..25124949 -
Chr13chromosomeChr13:42014736..42014865 +
chr13chromosomechr13:30655767..30655899 +
Chr_13chromosomeChr_13:28902126..28902267 +
Chr13chromosomeChr13:44262472..44262598 +
Chr13chromosomeChr13:28381797..28382032 +
E13chromosomeE13:87518184..87518306 +
F13chromosomeF13:74641732..74641861 +
Chr13chromosomeDPL0308:1..547 .
Chr13:39721789..39722329 +
Chr13chromosomeDPL0308:1..547 .
Chr13:15600531..15601071 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394945GQ394945Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch13_At.13N/A75.7DPL0308aView
20-153 x sGK9708, RIL (2016)AD_ch13_At.13N/A47.7DPL0308aView
3Monsanto SSR Bin Map, (2009)AD_ch13_At.13N/A81DPL0308aView
4TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A49.1DPL0308bView
50-153 x sGK9708, RIL (2016)AD_ch13_At.13N/A54.4DPL0308bView
6Monsanto SSR Bin Map, (2009)AD_ch18_Dt.13N/A61DPL0308bView
7Yumian-1 x T586, RIL (2015)AD_ch13_At.13N/A102.8DPL0308View
8GX1135 x GX100-2, RIL (2016)AD_ch13_At.13N/A45.5DPL0308View
9LMY22 x LY343, RIL (2020)A13N/A58.2DPL0308View
10GX1135 x GX100-2, F2 (2013)AD_ch13_At.13N/A97.4DPL308View
11TM-1 x 3-79, RIL (2012.v3)AD_ch13_At.13N/A75.66DPL0308aView
12TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A49.14DPL0308bView
13TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A82.7dPL0308-130View
14TM-1 x Hai-7124, BC1 (2012)AD_ch18_Dt.13N/A54dPL0308-150View
Sequence
>DPL0308 ID=DPL0308; Name=DPL0308; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
GGATAACATATCTGCTGTTGACGAATAAATAGCATTTTCTTACCATCATC
ATCATCATCATCGTCATCATCATCATTGCATGTAACACTTGTTTGATGCT
TTTATAAAGTCTGATTATGTGTTAAAGCACCCAACGTAC