DPL0280, DPL0280 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0280
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0280_orig
Source Typegenomic
Repeat Motif(TCA)8
PCR ConditionAnnealing temperature: 55
Primer 1DPL0280_F: AGTGTACCACTAAGTCTTCGAGCC
Primer 2DPL0280_R: GAATCATTACTGTCACCTTGAGCA
PolymorphismP_ DPL0280
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:42115934..42116143 -
A12chromosomeA12:75681127..75681343 -
CM018226.1chromosomeCM018226.1:39083446..39083655 -
CM018213.1chromosomeCM018213.1:72815375..72815588 -
D5_12chromosomeD5_12:20527286..20527495 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:28547450..28547666 +
D10_12chromosomeD10_12:33986430..33986640 -
CM016625.1chromosomeCM016625.1:102548664..102548874 -
D12chromosomeD12:38368223..38368432 -
A12chromosomeA12:61826660..61826876 -
Ghir_D12chromosomeGhir_D12:41507840..41508049 -
Ghir_A12chromosomeGhir_A12:80490758..80490974 -
D12chromosomeD12:40739132..40739341 -
A12chromosomeA12:81646959..81647175 -
D12chromosomeD12:41428058..41428267 -
A12chromosomeA12:78582550..78582766 -
D12chromosomeD12:39241968..39242177 -
A12chromosomeA12:75739025..75739241 -
scaffold4supercontigscaffold4:776309..776518 +
scaffold2594supercontigscaffold2594:177850..178063 +
Gbar_D12chromosomeGbar_D12:38327282..38327491 -
Gbar_A12chromosomeGbar_A12:75181959..75182172 -
D12chromosomeD12:39666181..39666390 -
A12chromosomeA12:74863715..74863928 -
CM017634.1chromosomeCM017634.1:39521538..39521747 -
CM017621.1chromosomeCM017621.1:76351120..76351333 -
CM017660.1chromosomeCM017660.1:41838425..41838634 -
CM017647.1chromosomeCM017647.1:79109127..79109340 -
CM017712.1chromosomeCM017712.1:40175354..40175563 -
CM017699.1chromosomeCM017699.1:75199069..75199282 -
D12chromosomeD12:41383847..41384056 -
A12chromosomeA12:81850641..81850857 -
Chr12chromosomeChr12:81495304..81495514 -
Chr12chromosomeChr12:88737162..88737378 -
Chr12chromosomeChr12:37242409..37242618 -
B_12chromosomeB_12:62307306..62307516 -
Chr08chromosomeChr08:37584701..37584910 -
chr08chromosomechr08:28779990..28780200 -
Chr_08chromosomeChr_08:26445690..26445900 -
Chr08chromosomeChr08:38588925..38589134 -
Chr08chromosomeChr08:26140963..26141169 -
Chr08chromosomeChr08:20580748..20580958 -
Chr08chromosomeChr08:25239127..25239333 -
E12chromosomeE12:84029375..84029591 -
F12chromosomeF12:66669720..66669930 -
Chr12chromosomeChr12:33124882..33125092 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0280_origDPL0280_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A79.42DPL0280View
2TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A57.74DPL0280View
3AD-genome wide Reference Map (2009)AD_ch12_At.12N/A152DPL0280View
4TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A57.7DPL0280View
5TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A57.74DPL0280View
Sequence
>DPL0280 ID=DPL0280; Name=DPL0280; organism=Gossypium hirsutum; type=genetic_marker; length=217bp
AGTGTACCACTAAGTCTTCGAGCCAAGGAGGTGAAAATGGACAAGTCCTC
GTCCCTTGGTCCGAATACATCAATGATGATGAAAACCGAACCCGGTTTTT
ATGTTATAATGACGATCATGATCTTATCAACAACTCAGATTTCGAGTGCC
AGTCTCATCATCATCATCATCATCATCATGATCATGGACTAGGTGCTCAA
GGTGACAGTAATGATTC