DPL0239, DPL0239 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0239
AliasDPL239
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Delta Opal
Source SequenceDPL0239_orig
Source Typegenomic
Repeat Motif(ATG)8
PCR ConditionAnnealing temperature: 55
Primer 1DPL0239_F: GGAAACTATTGCTGCTAGTGAGGT
Primer 2DPL0239_R: TCTTCAACTCCCACTGACCTATTT
PolymorphismP_ DPL0239
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:20525583..20525825 +
A06chromosomeA06:32645112..32645353 +
CM018220.1chromosomeCM018220.1:19251165..19251410 +
CM018207.1chromosomeCM018207.1:30707014..30707251 +
D5_06chromosomeD5_06:19462479..19462750 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:33738995..33739236 +
D10_06chromosomeD10_06:42491655..42492316 -
CM016619.1chromosomeCM016619.1:102860595..102860831 -
Dt_chr10chromosomeDt_chr10:27714904..27715146 +
At_chr11chromosomeAt_chr11:46657618..46657859 +
D06chromosomeD06:19587878..19588120 +
A06chromosomeA06:30632209..30632450 +
Ghir_D06chromosomeGhir_D06:20171557..20171799 +
Ghir_A06chromosomeGhir_A06:32521034..32521275 +
D06chromosomeD06:19648283..19648525 +
A06chromosomeA06:31517153..31517394 +
D06chromosomeD06:20121153..20121395 +
A06chromosomeA06:31674633..31674874 +
D06chromosomeD06:19679297..19679539 +
A06chromosomeA06:31524301..31524542 +
Dt06chromosomeDt06:18476956..18477201 +
scaffold48733supercontigscaffold48733:6908..7579 +
scaffold3508supercontigscaffold3508:149394..149639 +
scaffold49453supercontigscaffold49453:8938..9606 -
scaffold48733supercontigscaffold48733:3306..3974 -
scaffold46717supercontigscaffold46717:316..847 -
scaffold39547supercontigscaffold39547:1491..2159 -
C30066748supercontigC30066748:1..240 -
Gbar_D06chromosomeGbar_D06:19426586..19426831 +
Gbar_A06chromosomeGbar_A06:30498036..30498273 +
D06chromosomeD06:19171042..19171287 +
CM017628.1chromosomeCM017628.1:19982837..19983081 +
CM017615.1chromosomeCM017615.1:31737170..31737417 +
CM017654.1chromosomeCM017654.1:19576058..19576300 +
CM017641.1chromosomeCM017641.1:33031744..33031982 +
CM017706.1chromosomeCM017706.1:19456789..19457031 +
D06chromosomeD06:20400975..20401217 +
A06chromosomeA06:32536758..32536999 +
Chr06chromosomeChr06:33497418..33497656 +
Chr06chromosomeChr06:34717512..34717753 +
Chr06chromosomeChr06:19248560..19248831 +
B_06chromosomeB_06:68002957..68003190 -
Chr10chromosomeChr10:19787544..19787778 +
Chr10chromosomeChr10:20643608..20643849 +
Chr11chromosomeChr11:26234610..26234921 +
Chr10chromosomeChr10:11892875..11893545 +
Chr10chromosomeChr10:14431537..14432207 +
Chr06chromosomeChr06:139698130..139698369 -
Chr10chromosomeDPL0239:1..553 .
Chr10:19260021..19260601 +
scaffold304supercontigDPL0239:1..553 .
scaffold304:388324..388904 +
Germplasm
Stock NameType
Delta Opalaccession
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0239_origDPL0239_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A96DPL0239View
2TM-1 x 3-79, RIL (2012)AD_ch25_Dt.06N/A62.78DPL0239View
3Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A77.89DPL0239View
4TM-1 x 3-79, RIL (2014)AD_ch25_Dt.06N/A58.6DPL0239View
5TM-1 x 3-79, RIL (2012.v3)AD_ch25_Dt.06N/A58.64DPL0239View
Sequence
>DPL0239 ID=DPL0239; Name=DPL0239; organism=Gossypium hirsutum; type=genetic_marker; length=243bp
GGAAACTATTGCTGCTAGTGAGGTTGAAGGAGTAAATACTAAAAGGGTAA
GTAGTGATATAAGTGAAGATGCAAATGAGGATGAGGATGATAGTGACTTT
CAAAGTAATGAACCAAAAGAGGTAAGTACGGAAGGATGGGTTAGTAATGA
TGATGATGATGATGATGATGAGATAGTGAATATTAGTAATAAGTATAGGG
TTTTTATAGAGAAAAAGAAAAATAGGTCAGTGGGAGTTGAAGA