DPL0229, DPL0229 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0229
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0229_orig
Source Typegenomic
Repeat Motif(ATG)13
PCR ConditionAnnealing temperature: 55
Primer 1DPL0229_F: GAGTGGTTTAGTTGTAAAGACCCATGT
Primer 2DPL0229_R: TATTACTTGCACAGCCTCTTAGGG
PolymorphismP_ DPL0229
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:53858094..53858340 -
A13chromosomeA13:92330643..92330876 -
CM018227.1chromosomeCM018227.1:49831996..49832233 -
CM018214.1chromosomeCM018214.1:96470918..96471151 -
D5_13chromosomeD5_13:48438797..48439024 -
KI_13chromosomeKI_13:35247275..35247713 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:110721405..110721638 -
D10_13chromosomeD10_13:50614350..50614569 -
CM016626.1chromosomeCM016626.1:140962615..140962846 -
Dt_chr13chromosomeDt_chr13:19536034..19536280 +
Dt_chr7chromosomeDt_chr7:20414336..20414569 -
D13chromosomeD13:49645035..49645281 -
A13chromosomeA13:68735315..68735548 -
Ghir_D13chromosomeGhir_D13:52823147..52823390 -
Ghir_A13chromosomeGhir_A13:96021876..96022109 -
D13chromosomeD13:53940245..53940491 -
A13chromosomeA13:98705275..98705508 -
D13chromosomeD13:52988871..52989112 -
A13chromosomeA13:96915742..96915975 -
D13chromosomeD13:49914602..49914848 -
A13chromosomeA13:94943613..94943846 -
Dt13chromosomeDt13:52261391..52261628 -
scaffold52341supercontigscaffold52341:53..286 -
scaffold15155supercontigscaffold15155:39463..39700 -
Gbar_D13chromosomeGbar_D13:49509161..49509398 -
Gbar_A13chromosomeGbar_A13:97240008..97240241 -
D13chromosomeD13:50878605..50878851 -
A13chromosomeA13:100698702..100698935 -
CM017635.1chromosomeCM017635.1:50519625..50519874 -
CM017622.1chromosomeCM017622.1:98102043..98102276 -
CM017661.1chromosomeCM017661.1:53806455..53806692 -
CM017648.1chromosomeCM017648.1:103213394..103213627 -
CM017700.1chromosomeCM017700.1:98485886..98486132 -
D13chromosomeD13:54019175..54019421 -
A13chromosomeA13:99305528..99305761 -
Chr13chromosomeChr13:104098341..104098574 -
Chr13chromosomeChr13:108707030..108707263 -
Chr13chromosomeChr13:48432521..48432749 -
B_13chromosomeB_13:14164460..14164688 +
Chr13chromosomeChr13:49964441..49964672 -
chr13chromosomechr13:36589579..36589816 -
Chr_13chromosomeChr_13:34694501..34694720 -
Chr13chromosomeChr13:52364742..52364988 -
Chr13chromosomeChr13:33950968..33951193 -
Chr13chromosomeChr13:26436108..26436324 -
Chr13chromosomeChr13:33162428..33162665 -
E13chromosomeE13:100313522..100313735 -
F13chromosomeF13:84469675..84469891 -
Chr13chromosomeChr13:19174157..19174385 +
Chr13chromosomeDPL0229:1..733 .
Chr13:47348633..47349353 -
scaffold485supercontigDPL0229:1..733 .
scaffold485:107567..108287 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0229_origDPL0229_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch18_Dt.13N/A58.8DPL0229View
2TM-1 x 3-79, RIL (2012)AD_ch18_Dt.13N/A60.25DPL0229View
3AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A113DPL0229View
4TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A61.2DPL0229View
5TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A61.23DPL0229View
Sequence
>DPL0229 ID=DPL0229; Name=DPL0229; organism=Gossypium hirsutum; type=genetic_marker; length=241bp
GAGTGGTTTAGTTGTAAAGACCCATGTGTAAAAGTTTCACATGTCTACAA
CTTCAACTACCAATGTGAATGATGATGATGATGATGATGATGATGATGAT
GATGATGACAGGCCTCTAAATTCTAAAATTAAGCTCTTTGGTATTGTACC
AAAAATACCTCACTCAAAAAACATTATCTCAGAACCCAAGACTTAGTTCA
GTTAGGTATACAGATACCCCTAAGAGGCTGTGCAAGTAATA