DPL0200, DPL0200 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0200
Genbank IDGQ394897
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394897
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0200_F: GCGTAGCTACTTGGAAAGATTCAG
Primer 2DPL0200_R: TAGCGGAAGTGGTCATCTCTTATT
PolymorphismP_ DPL0200
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394897
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:22664779..22665012 -
A02chromosomeA02:52751825..52752057 -
CM018217.1chromosomeCM018217.1:26290336..26290539 -
CM018203.1chromosomeCM018203.1:63117122..63117317 -
D5_02chromosomeD5_02:21957091..21957300 +
KI_2_4chromosomeKI_2_4:24415504..24415695 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:43366025..43366234 +
CM016615.1chromosomeCM016615.1:64255180..64255369 -
Dt_chr3chromosomeDt_chr3:30850776..30851007 -
At_chr3chromosomeAt_chr3:55494947..55495263 -
D03chromosomeD03:17801441..17801644 -
Ghir_A02chromosomeGhir_A02:57322177..57322449 +
Ghir_D03chromosomeGhir_D03:26072291..26072526 -
A02chromosomeA02:54941629..54941863 +
D03chromosomeD03:27192967..27193204 -
A02chromosomeA02:55335597..55335831 +
D03chromosomeD03:27009388..27009618 -
A02chromosomeA02:54788319..54788589 +
D03chromosomeD03:26092213..26092450 -
Dt03chromosomeDt03:19412267..19412470 -
scaffold7188supercontigscaffold7188:155282..155477 +
scaffold7905supercontigscaffold7905:44833..45036 -
Gbar_D03chromosomeGbar_D03:25102139..25102340 -
Gbar_A02chromosomeGbar_A02:63371139..63371334 -
A02chromosomeA02:54857061..54857256 +
D03chromosomeD03:26644627..26644830 -
CM017625.1chromosomeCM017625.1:26340575..26340780 -
CM017611.1chromosomeCM017611.1:64777118..64777379 -
CM017651.1chromosomeCM017651.1:29315487..29315720 -
CM017637.1chromosomeCM017637.1:69724434..69724641 -
CM017703.1chromosomeCM017703.1:26754773..26754976 -
CM017689.1chromosomeCM017689.1:64680589..64680781 -
D03chromosomeD03:27549782..27550015 -
A02chromosomeA02:67765093..67765325 -
Chr02chromosomeChr02:49236954..49237167 +
Chr02chromosomeChr02:59448479..59448688 -
Chr02chromosomeChr02:23357424..23357628 +
B_04chromosomeB_04:31788323..31788516 -
Chr03chromosomeChr03:25277005..25277200 +
chr03chromosomechr03:18997596..18997884 -
Chr_03chromosomeChr_03:15910351..15910681 -
Chr03chromosomeChr03:26838280..26838513 +
Chr03chromosomeChr03:16189223..16189420 -
Chr03chromosomeChr03:14138438..14138727 -
Chr03chromosomeChr03:17203720..17204021 -
E02chromosomeE02:46483336..46483531 +
F02chromosomeF02:38912792..38912987 +
Chr02chromosomeChr02:66548583..66548778 -
Chr03chromosomeDPL0200:1..557 .
Chr03:25194487..25195019 -
Chr4chromosomeDPL0200:1..557 .
Chr4:17728600..17729132 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394897GQ394897Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A58.1DPL0200aView
2TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch02_At.02N/A70.7DPL0200aView
3Monsanto SSR Bin Map, (2009)AD_ch02_At.02N/A41DPL0200aView
4Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A67.5DPL0200View
5TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch17_Dt.03N/A58.2DPL0200View
6GX1135 x VGX100-2, RIL (2016)AD_ch02_At.02N/A49.1DPL0200View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A99.2DPL0200View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch17_Dt.03N/A78.3DPL0200View
9CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A59.7DPL0200View
10LMY22 x LY343, RIL (2016)chr.2N/A20DPL0200View
11LMY22 x LY343, RIL (2020)A02N/A101.84DPL0200View
12(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A40.7MON_DPL0200View
13TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A53.3DPL0200bView
14TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch17_Dt.03N/A44.8DPL0200bView
15W10 x TM-1, F2:3 (2015)AD_ch02_At.02N/A125.5MON-DPL0200View
16GX1135 x GX100-2, F2 (2013)AD_ch02_At.02N/A99.3DPL200View
17CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A62.42DPL0200View
18TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A58.13DPL0200aView
19TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A53.26DPL0200bView
20TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A67.5dPL0200-210View
Sequence
>DPL0200 ID=DPL0200; Name=DPL0200; organism=Gossypium hirsutum; type=genetic_marker; length=236bp
GCGTAGCTACTTGGAAAGATTCAGTGATAGAACTTTTGACAAAACATGGA
TAGATTTGTATATCTATATAATATTTGGGCTCAATTTACTGTAGTTTAGT
TAGTTAAGAGAATAGATTATAAAGTTAAAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATTATAGTG
AAGCATTTTGGAAATAAGAGATGACCACTTCCGCTA