DPL0200, DPL0200 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0200
Genbank IDGQ394897
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394897
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0200_F: GCGTAGCTACTTGGAAAGATTCAG
Primer 2DPL0200_R: TAGCGGAAGTGGTCATCTCTTATT
PolymorphismP_ DPL0200
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Germplasm
Stock NameType
Delta Opalcultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
DPL0200_FDPL0200_FGossypium hirsutumprimer
DPL0200_RDPL0200_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber uniformityqFU.YCY7-4WC_chr02-2.bb09Gossypium hirsutumQTL
micronaireqMIC.GVG-RIL_ch02-1.xy12Gossypium hirsutumQTL
2.5 span lengthqSL2.5.GVG-RIL_ch02-1.cz12.1Gossypium hirsutumQTL
2.5 span lengthqSL2.5.GVG-RIL_ch02-1.xy12.1Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0200aDPL0200aGossypium hirsutummarker_locus
DPL0200DPL0200Gossypium hirsutummarker_locus
MON_DPL0200MON_DPL0200Gossypium hirsutummarker_locus
DPL0200bDPL0200bGossypium hirsutummarker_locus
MON-DPL0200MON-DPL0200Gossypium hirsutummarker_locus
DPL200DPL200Gossypium hirsutummarker_locus
DPL0200DPL0200-62.42Gossypium hirsutummarker_locus
DPL0200aDPL0200a-58.13Gossypium hirsutummarker_locus
DPL0200bDPL0200b-53.26Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394897GQ394897Gossypium hirsutumsequence_feature


Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:22664779..22665012 -
A02chromosomeA02:52751825..52752057 -
CM018217.1chromosomeCM018217.1:26290336..26290539 -
CM018203.1chromosomeCM018203.1:63117122..63117317 -
D5_02chromosomeD5_02:21957091..21957300 +
KI_2_4chromosomeKI_2_4:24415504..24415695 -
Chr2chromosomeChr2:79829619..79829828 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:43366025..43366234 +
Chr4chromosomeChr4:17728868..17729077 +
CM016615.1chromosomeCM016615.1:64255180..64255369 -
Dt_chr3chromosomeDt_chr3:30850776..30851007 -
At_chr3chromosomeAt_chr3:55494947..55495263 -
D03chromosomeD03:17801441..17801644 -
Ghir_A02chromosomeGhir_A02:57322177..57322449 +
Ghir_D03chromosomeGhir_D03:26072291..26072526 -
A02chromosomeA02:54941629..54941863 +
D03chromosomeD03:27192967..27193204 -
A02chromosomeA02:55335597..55335831 +
D03chromosomeD03:27009388..27009618 -
A02chromosomeA02:54788319..54788589 +
D03chromosomeD03:26092213..26092450 -
Dt03chromosomeDt03:19412267..19412470 -
scaffold7188supercontigscaffold7188:155282..155477 +
scaffold7905supercontigscaffold7905:44833..45036 -
Gbar_D03chromosomeGbar_D03:25102139..25102340 -
Gbar_A02chromosomeGbar_A02:63371139..63371334 -
A02chromosomeA02:54857061..54857256 +
D03chromosomeD03:26644627..26644830 -
CM017625.1chromosomeCM017625.1:26340575..26340780 -
CM017611.1chromosomeCM017611.1:64777118..64777379 -
CM017651.1chromosomeCM017651.1:29315487..29315720 -
CM017637.1chromosomeCM017637.1:69724434..69724641 -
CM017703.1chromosomeCM017703.1:26754773..26754976 -
CM017689.1chromosomeCM017689.1:64680589..64680781 -
Chr03chromosomeDPL0200:1..557 .
Chr03:25194487..25195019 -
Chr4chromosomeDPL0200:1..557 .
Chr4:17728600..17729132 +
Sequence
>DPL0200 ID=DPL0200|Name=DPL0200|organism=Gossypium hirsutum|type=genetic_marker|length=236bp
GCGTAGCTACTTGGAAAGATTCAGTGATAGAACTTTTGACAAAACATGGA
TAGATTTGTATATCTATATAATATTTGGGCTCAATTTACTGTAGTTTAGT
TAGTTAAGAGAATAGATTATAAAGTTAAAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGATTATAGTG
AAGCATTTTGGAAATAAGAGATGACCACTTCCGCTA
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr02N/AAD_chr.0250DPL0200aView
2TM-1 x 3-79, RIL (2014)T3-RIL.14_chr02N/AAD_chr.0258.1DPL0200aView
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr02N/AAD_chr.0270.7DPL0200aView
4Yumian-1 x T586, RIL (2015)YT-RIL.15_chr02N/AAD_chr.0267.5DPL0200View
5TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr17N/AAD_chr.1758.2DPL0200View
6GX1135 x VGX100-2, RIL (2016)GVG-RIL_chr02-1N/AAD_chr.0249.1DPL0200View
7CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr02N/AAt.0299.2DPL0200View
8CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr17N/ADt.0378.3DPL0200View
9CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr02N/AAD_chr.0259.7DPL0200View
10(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr02-2N/AAD_chr.0240.7MON_DPL0200View
11TM-1 x 3-79, RIL (2014)T3-RIL.14_chr17N/AAD_chr.1753.3DPL0200bView
12TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr17N/AAD_chr.1744.8DPL0200bView
13W10 x TM-1, F2:3 (2015)WT-F2:3_chr02-1N/AAD_chr.02125.5MON-DPL0200View
14GX1135 x GX100-2, F2 (2013)GG-F2_chr02-1N/AAD_chr.0299.3DPL200View
15CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr02N/AAt.0262.42DPL0200-62.42View
16TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.02N/AAD_chr.0258.13DPL0200a-58.13View
17TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.17N/AAD_chr.1753.26DPL0200b-53.26View
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394897