DPL0176, DPL0176 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0176
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0176_orig
Source Typegenomic
Repeat Motif(CT)16+(CAAAA)2+(TTTC)2
PCR ConditionAnnealing temperature: 55
Primer 1DPL0176_F: GAAACTGGGAGTGAAAGAACAAGT
Primer 2DPL0176_R: TGGATGTTAGCTTTGGTTTACCC
PolymorphismP_ DPL0176
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:56637896..56638110 -
A08chromosomeA08:108411224..108411458 -
CM018222.1chromosomeCM018222.1:53185138..53185352 -
CM018209.1chromosomeCM018209.1:103848264..103848490 -
D5_08chromosomeD5_08:49433281..49433496 -
KI_08chromosomeKI_08:31989823..31990034 -
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:113099452..113099676 -
D10_08chromosomeD10_08:11567688..11567902 +
CM016621.1chromosomeCM016621.1:21337041..21337263 +
scaffold842.1supercontigscaffold842.1:322794..323008 +
Dt_chr13chromosomeDt_chr13:8063419..8063653 -
D08chromosomeD08:53262297..53262511 -
A08chromosomeA08:89603456..89603690 -
Ghir_D08chromosomeGhir_D08:55897848..55898062 -
Ghir_A08chromosomeGhir_A08:107701595..107701829 -
D08chromosomeD08:56753371..56753585 -
A08chromosomeA08:110733701..110733935 -
D08chromosomeD08:55792982..55793196 -
A08chromosomeA08:110518005..110518239 -
D08chromosomeD08:53081402..53081616 -
A08chromosomeA08:106556360..106556594 -
scaffold7870supercontigscaffold7870:234034..234260 -
Gbar_D08chromosomeGbar_D08:53167610..53167824 -
Gbar_A08chromosomeGbar_A08:104430953..104431179 -
D08chromosomeD08:55230177..55230391 -
A08chromosomeA08:105695291..105695525 -
CM017630.1chromosomeCM017630.1:54670213..54670427 -
CM017617.1chromosomeCM017617.1:104131103..104131325 -
CM017656.1chromosomeCM017656.1:56697706..56697920 -
CM017643.1chromosomeCM017643.1:113689485..113689721 -
CM017708.1chromosomeCM017708.1:53829546..53829760 -
CM017695.1chromosomeCM017695.1:104689366..104689592 -
D08chromosomeD08:56442382..56442596 -
A08chromosomeA08:112369466..112369700 -
Chr08chromosomeChr08:116038386..116038614 -
Chr08chromosomeChr08:117010565..117010789 -
Chr08chromosomeChr08:50318736..50318950 -
B_08chromosomeB_08:88263772..88263991 -
Chr04chromosomeChr04:51814024..51814238 -
chr04chromosomechr04:38973172..38973386 -
Chr04chromosomeChr04:54181725..54181939 -
Chr04chromosomeChr04:34034170..34034492 -
Chr04chromosomeChr04:28676629..28676825 -
Chr04chromosomeChr04:34392323..34392543 -
E08chromosomeE08:104657119..104657334 -
F08chromosomeF08:91082439..91082665 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0176_origDPL0176_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch08_At.08N/A77DPL0176View
2TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A78.72DPL0176View
3Emian-22 x 3-79, BC1 (2011)AD_ch08_At.08N/A73.96DPL0176View
4DH962 X Ji Mian 5, F2 (2015)AD_ch08_At.08N/A27.62DPL0176View
5TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A88.5DPL0176View
6DH962 x Ji Mian 5, RIL (2015)AD_ch08_At.08N/A52.4DPL0176View
7Yumian-1 x T586, RIL (2006)AD_ch08_At.08N/A10.2DPL0176aView
8Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A83.3DPL0176aView
9Yumian-1 x T586, RIL (2006)AD_ch11_At.11N/A24.8DPL0176bView
10Yumian-1 x T586, RIL (2015)AD_ch11_At.11N/A68.6DPL0176bView
11Yumian-1 x T586, RIL (2009)AD_ch08_At.08N/A51.6DPL0176/210tView
12Yumian-1 x T586, RIL (2009)AD_ch11_At.11N/A24.5DPL0176/330tView
13DH962 x Jinmian-6, F2 (2009)AD_ch08_At.08N/A0DPL176View
14DH962 x Jinmian-6, F2 (2009)AD_ch08_At.08N/A0DPL176View
15TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A88.5DPL0176View
Sequence
>DPL0176 ID=DPL0176; Name=DPL0176; organism=Gossypium hirsutum; type=genetic_marker; length=235bp
GAAACTGGGAGTGAAAGAACAAGTTGCAAAGTGTAAGACAAGGAAGGGAT
ATCACGTGCGGTGTCTCAAGTCAAAACGTAAGGGAAGGCCACCGTATAGC
TGTCGGCCACGAGGCAACTGTCATTTTCATCGGGAATTGCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTGCCAAAACAAAATTTCTTTCATTCACCCC
CTTGGATTCCGGGGGTAAACCAAAGCTAACATCCA