DPL0143, DPL0143 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0143
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0143_orig
Source Typegenomic
Repeat Motif(TC)12
PCR ConditionAnnealing temperature: 55
Primer 1DPL0143_F: CTCACGAATTCTCTTCTCTAGTTCG
Primer 2DPL0143_R: CATTCCAGAGAGATCAATATTAGGAGG
PolymorphismP_ DPL0143
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:25444051..25444153 -
CM018219.1chromosomeCM018219.1:24037106..24037202 -
D5_05chromosomeD5_05:22771084..22771182 -
D10_05chromosomeD10_05:37660579..37660689 +
Dt_chr9chromosomeDt_chr9:46617039..46617141 +
At_chr9chromosomeAt_chr9:35598973..35599075 -
scaffold183094supercontigscaffold183094:85..187 -
D05chromosomeD05:24615467..24615569 -
Ghir_D05chromosomeGhir_D05:24753607..24753709 -
Ghir_A05chromosomeGhir_A05:27219276..27219368 -
D05chromosomeD05:24112353..24112455 -
D05chromosomeD05:24591888..24591988 -
D05chromosomeD05:24469368..24469468 -
At05chromosomeAt05:22935510..22935602 -
scaffold3882supercontigscaffold3882:177859..177955 +
scaffold194supercontigscaffold194:6072..6164 -
Gbar_D05chromosomeGbar_D05:24492032..24492128 -
D05chromosomeD05:24312755..24312851 -
CM017627.1chromosomeCM017627.1:24303900..24304014 +
CM017653.1chromosomeCM017653.1:24690962..24691096 -
CM017705.1chromosomeCM017705.1:24370223..24370319 -
D05chromosomeD05:25113514..25113616 -
Chr05chromosomeChr05:22839883..22839981 -
Chr09chromosomeChr09:23454655..23454773 -
chr09chromosomechr09:20757181..20757285 -
Chr_09chromosomeChr_09:19276841..19277050 -
Chr09chromosomeChr09:24053077..24053181 -
Chr09chromosomeChr09:19337939..19338029 -
Chr09chromosomeChr09:17064032..17064126 -
F05chromosomeF05:24237765..24237871 -
Chr05chromosomeChr05:101157695..101157814 +
Chr09chromosomeDPL0143:1..346 .
Chr09:22664609..22664952 -
Chr9chromosomeDPL0143:1..346 .
Chr9:31146620..31146963 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0143_origDPL0143_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A97.87DPL0143View
2Yumian-1 x T586, RIL (2015)AD_ch19_Dt.05N/A104.4DPL0143View
3TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A88.3DPL0143View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A92.3DPL0143View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch19_Dt.05N/A46.4DPL0143View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch19_Dt.05N/A0MON_DPL0143View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch19_Dt.05N/A101.19DPL0143View
8TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A88.29DPL0143View
Sequence
>DPL0143 ID=DPL0143; Name=DPL0143; organism=Gossypium hirsutum; type=genetic_marker; length=101bp
CTCACGAATTCTCTTCTCTAGTTCGTGTATTAGTTCTCTCTCTCTCTCTC
TCTCTCTCTTGCCATCGTATGGCACCTCCTAATATTGATCTCTCTGGAAT
G