DPL0140, DPL0140 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0140
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0140_orig
Source Typegenomic
Repeat Motif(GA)17
PCR ConditionAnnealing temperature: 55
Primer 1DPL0140_F: TATAGTTAGAAGCCAATGCCAAGG
Primer 2DPL0140_R: GAGAACCACCTTTCTTCAGCATC
PolymorphismP_ DPL0140
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:3523784..3524028 +
CM018219.1chromosomeCM018219.1:3249572..3249834 +
CM018206.1chromosomeCM018206.1:3914669..3914895 +
D5_05chromosomeD5_05:3142792..3143028 +
D10_05chromosomeD10_05:57361857..57362073 -
CM016626.1chromosomeCM016626.1:5607377..5607623 +
Dt_chr9chromosomeDt_chr9:66029504..66029748 -
D05chromosomeD05:3366540..3366784 +
Ghir_D05chromosomeGhir_D05:3498044..3498285 +
Ghir_A05chromosomeGhir_A05:3963956..3964178 +
D05chromosomeD05:3297328..3297572 +
D05chromosomeD05:3408649..3408892 +
A05chromosomeA05:3937371..3937596 +
D05chromosomeD05:3268991..3269237 +
scaffold14365supercontigscaffold14365:104412..104638 -
Gbar_D05chromosomeGbar_D05:3400955..3401207 +
Gbar_A05chromosomeGbar_A05:3611961..3612187 +
D05chromosomeD05:3549403..3549641 +
A05chromosomeA05:4075247..4075473 +
CM017627.1chromosomeCM017627.1:3372683..3372925 +
CM017614.1chromosomeCM017614.1:3940047..3940277 +
CM017653.1chromosomeCM017653.1:3573100..3573328 +
CM017705.1chromosomeCM017705.1:3376746..3376980 +
CM017692.1chromosomeCM017692.1:3884667..3884899 +
D05chromosomeD05:3433125..3433369 +
Chr05chromosomeChr05:3148196..3148432 +
B_05chromosomeB_05:82345220..82345470 -
Chr09chromosomeChr09:3277764..3277984 +
chr09chromosomechr09:3092757..3093376 +
Chr_09chromosomeChr_09:3432410..3432628 +
Chr09chromosomeChr09:3377258..3377475 +
Chr09chromosomeChr09:3697566..3697782 -
Chr09chromosomeChr09:2508447..2508665 +
Chr09chromosomeChr09:3051505..3051725 +
E05chromosomeE05:4174166..4174419 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0140_origDPL0140_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A210.78DPL0140View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A41DPL0140View
3TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A21.65DPL0140View
4TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A161.9DPL0140View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A199.1DPL0140View
6TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A161.87DPL0140View
7PD 94042 x (AD)4-08, F2 (2016)AD_ch19_Dt.05N/A36.4DPL0140View
Sequence
>DPL0140 ID=DPL0140; Name=DPL0140; organism=Gossypium hirsutum; type=genetic_marker; length=241bp
TATAGTTAGAAGCCAATGCCAAGGACGACAAGATTTGTAGATTGAAAATG
TTTTCAATCATGACTTAAGGGGTAAACTTAGAAAGTTTTAAGCCATTCTT
TAAAGAACAAAGATAACAAATATATATCTTATGGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAAAGAGTGAGGAGATTTTGGGCTATCGAACAATT
GTGCCCGATCAAAGTTTCGATGCTGAAGAAAGGTGGTTCTC