DPL0139, DPL0139 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0139
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0139_orig
Source Typegenomic
Repeat Motif(TC)14
PCR ConditionAnnealing temperature: 55
Primer 1DPL0139_F: AGGGATTTGCTGGCAGTAGTT
Primer 2DPL0139_R: CACCAAGTCAATTGAGTGATACTAGC
PolymorphismP_ DPL0139
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:52888609..52888761 -
A12chromosomeA12:90719345..90719515 -
CM018226.1chromosomeCM018226.1:49596880..49597032 -
CM018213.1chromosomeCM018213.1:87662532..87662732 -
D5_12chromosomeD5_12:10067827..10067973 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:12697520..12697700 +
D10_12chromosomeD10_12:44545715..44545898 -
CM016625.1chromosomeCM016625.1:16350339..16350482 +
scaffold2090.1supercontigscaffold2090.1:173689..173859 -
scaffold2090.1supercontigscaffold2090.1:169943..170113 -
Dt_chr8chromosomeDt_chr8:45953683..45953835 -
D12chromosomeD12:49119162..49119314 -
A12chromosomeA12:76438133..76438303 -
Ghir_D12chromosomeGhir_D12:51972511..51972663 -
Ghir_A12chromosomeGhir_A12:95191545..95191700 -
D12chromosomeD12:50928850..50929002 -
A12chromosomeA12:95729819..95729989 -
D12chromosomeD12:52092151..52092303 -
A12chromosomeA12:93325171..93325339 -
D12chromosomeD12:49873211..49873363 -
A12chromosomeA12:90441373..90441543 -
scaffold9700supercontigscaffold9700:45638..45790 +
scaffold16506supercontigscaffold16506:21939..22129 +
Gbar_D12chromosomeGbar_D12:48901959..48902110 -
Gbar_D12chromosomeGbar_D12:48865191..48865343 -
D12chromosomeD12:50073254..50073406 -
A12chromosomeA12:89667887..89668089 -
CM017621.1chromosomeCM017621.1:89885146..89885306 +
CM017634.1chromosomeCM017634.1:49945991..49946143 -
CM017660.1chromosomeCM017660.1:52776400..52776552 -
CM017647.1chromosomeCM017647.1:94344652..94344826 -
CM017712.1chromosomeCM017712.1:50600266..50600418 -
CM017699.1chromosomeCM017699.1:89933636..89933832 -
D12chromosomeD12:52048817..52048969 -
A12chromosomeA12:96775940..96776110 -
A12chromosomeA12:96790630..96790782 -
Chr12chromosomeChr12:97441980..97442183 -
Chr12chromosomeChr12:104669711..104669893 -
Chr12chromosomeChr12:47709516..47709662 -
B_12chromosomeB_12:76359993..76360156 -
Chr08chromosomeChr08:47855602..47855750 -
Chr_08chromosomeChr_08:34710106..34710374 -
Chr08chromosomeChr08:49239297..49239453 -
Chr08chromosomeChr08:33861594..33861746 -
Chr08_3396500chromosomeChr08_3396500:11613..11757 -
Chr08chromosomeChr08:32790286..32790557 -
Chr12chromosomeChr12:4618157..4618305 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0139_origDPL0139_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A128DPL0139View
2TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A83.07DPL0139View
3AD-genome wide Reference Map (2009)AD_ch12_At.12N/A85DPL0139View
4TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A83.1DPL0139View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A99.7DPL0139View
6TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A83.07DPL0139View
7PD 94042 x (AD)4-08, F2 (2016)AD_ch12_At.12N/A166.2DPL0139View
Sequence
>DPL0139 ID=DPL0139; Name=DPL0139; organism=Gossypium hirsutum; type=genetic_marker; length=171bp
AGGGATTTGCTGGCAGTAGTTTTTCCTCTCTCTTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTGTCTCTGATCTCTTGAAAATTGAGTTTTATTTTTTTG
CATGGACTTAGTCCGACAAAATCTCTATTAATTAGTAGCTGAAATGCTAG
TATCACTCAATTGACTTGGTG