DPL0131, DPL0131 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0131
Genbank IDGQ394865
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394865
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0131_F: ACATACGGGTTGAAATGTACTCCT
Primer 2DPL0131_R: ATGAATGCAGATCATTACGCCT
PolymorphismP_ DPL0131
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394865
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:4351267..4351487 +
A11chromosomeA11:4335324..4335513 +
CM018225.1chromosomeCM018225.1:4062462..4062666 +
CM018212.1chromosomeCM018212.1:4538598..4538787 +
D5_11chromosomeD5_11:61847484..61847683 -
KI_11chromosomeKI_11:3596139..3596326 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:119914627..119914816 -
D10_11chromosomeD10_11:4047718..4047918 +
At_chr7chromosomeAt_chr7:5945377..5945566 +
scaffold3698.1supercontigscaffold3698.1:103403..103623 -
scaffold127341supercontigscaffold127341:165..354 +
D11chromosomeD11:4408886..4409106 +
A11chromosomeA11:4123650..4123839 +
Ghir_D11chromosomeGhir_D11:4311548..4311769 +
D11chromosomeD11:4195221..4195441 +
A11chromosomeA11:4444958..4445147 +
D11chromosomeD11:4311179..4311397 +
A11chromosomeA11:4527449..4527638 +
D11chromosomeD11:4205145..4205365 +
A11chromosomeA11:4679127..4679316 +
Dt11chromosomeDt11:5226061..5226263 +
At11chromosomeAt11:4849647..4849836 +
scaffold6540supercontigscaffold6540:335981..336183 +
scaffold14328supercontigscaffold14328:211674..211863 +
Gbar_D11chromosomeGbar_D11:4159137..4159341 +
Gbar_A11chromosomeGbar_A11:4331051..4331240 +
D11chromosomeD11:4168744..4168948 +
A11chromosomeA11:4585828..4586017 +
CM017633.1chromosomeCM017633.1:4122733..4122943 +
CM017620.1chromosomeCM017620.1:4679594..4679783 +
CM017659.1chromosomeCM017659.1:4206687..4206903 +
CM017646.1chromosomeCM017646.1:4671499..4671688 +
CM017711.1chromosomeCM017711.1:4213309..4213529 +
CM017698.1chromosomeCM017698.1:4595831..4596020 +
D11chromosomeD11:4323044..4323264 +
D11chromosomeD11:4349765..4349984 +
A11chromosomeA11:4740756..4740945 +
Chr11chromosomeChr11:4663142..4663331 +
Chr11chromosomeChr11:4524292..4524481 +
Chr11chromosomeChr11:59331586..59331785 -
B_11chromosomeB_11:4525327..4525535 +
Chr07chromosomeChr07:3980678..3980886 +
chr07chromosomechr07:3695220..3695412 +
Chr_07chromosomeChr_07:3740300..3740552 +
Chr07chromosomeChr07:4165400..4165600 +
Chr07chromosomeChr07:3144950..3145138 +
Chr07chromosomeChr07:3472660..3472947 +
E11chromosomeE11:4925898..4926090 +
F11chromosomeF11:3885503..3885699 +
Chr11chromosomeChr11:182085608..182085808 -
Chr07chromosomeDPL0131:1..674 .
Chr07:3873468..3874120 +
Chr7chromosomeDPL0131:1..674 .
Chr7:51555382..51556034 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394865GQ394865Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch21_Dt.11N/A85.4DPL0131View
2TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A35.2DPL0131View
3GX1135 x GX100-2, RIL (2015)AD_ch21_Dt.11N/A263.6DPL0131View
4GX1135 x GX100-2, RIL (2016)AD_ch21_Dt.11N/A263.5DPL0131View
5GX1135 x VGX100-2, RIL (2016)AD_ch21_Dt.11N/A0DPL0131View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch21_Dt.11N/A106.6DPL0131View
7Monsanto SSR Bin Map, (2009)AD_ch21_Dt.11N/A21DPL0131View
8DH962 X Ji Mian 5, F2 (2015)AD_ch21_Dt.11N/A35.8MON_DPL0131View
9DH962 x Ji Mian 5, RIL (2015)AD_ch21_Dt.11N/A29.3MON_DPL0131View
10GX1135 x GX100-2, F2 (2013)AD_ch11_At.11N/A116.3DPL131View
11TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A35.22DPL0131View
12TM-1 x Hai-7124, BC1 (2012)AD_ch21_Dt.11N/A26.3dPL0131-200View
Sequence
>DPL0131 ID=DPL0131; Name=DPL0131; organism=Gossypium hirsutum; type=genetic_marker; length=221bp
ACATACGGGTTGAAATGTACTCCTACTCCTAATTTGTCTGCAACATTAGT
AATCTACAAACCAACAAACTGTAGTGTGAGTTGATGGGAAACAAAAAATA
AAACTGTACCGATGAATGTGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAG
AGAGAGAGAGAGAGAACCAGTTTCGCCCCACCGAGAAGCACCATCCATGA
GGCGTAATGATCTGCATTCAT