DPL0113, DPL0113 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0113
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0113_orig
Source Typegenomic
Repeat Motif(GA)12
PCR ConditionAnnealing temperature: 55
Primer 1DPL0113_F: AAGTTAGTAGCAGCAAATTCTGGC
Primer 2DPL0113_R: GCTTCAAATTTCTGACGAACCTC
PolymorphismP_ DPL0113
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:13473148..13473367 +
A08chromosomeA08:16197555..16197772 +
CM018222.1chromosomeCM018222.1:12632333..12632552 +
CM018209.1chromosomeCM018209.1:15638944..15639161 +
D5_08chromosomeD5_08:12249258..12249495 +
KI_08chromosomeKI_08:7588748..7589284 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:17509163..17509374 +
D10_08chromosomeD10_08:49988304..49988841 -
CM016621.1chromosomeCM016621.1:121638136..121638347 -
Dt_chr4chromosomeDt_chr4:22367521..22367740 +
At_chr4chromosomeAt_chr4:36141072..36141289 -
D08chromosomeD08:12570306..12570525 +
A08chromosomeA08:15497566..15497783 +
Ghir_D08chromosomeGhir_D08:12537736..12537955 +
Ghir_A08chromosomeGhir_A08:16309503..16309720 +
D08chromosomeD08:12175615..12175834 +
A08chromosomeA08:15925330..15925547 +
D08chromosomeD08:12034939..12035158 +
A08chromosomeA08:16276702..16276919 +
D08chromosomeD08:12674418..12674637 +
A08chromosomeA08:16072462..16072679 +
scaffold5934supercontigscaffold5934:221486..221705 -
Gbar_D08chromosomeGbar_D08:12751107..12751326 +
Gbar_A08chromosomeGbar_A08:16013839..16014054 +
D08chromosomeD08:12827976..12828195 +
A08chromosomeA08:15656646..15656861 +
CM017630.1chromosomeCM017630.1:12827163..12827382 +
CM017617.1chromosomeCM017617.1:16070919..16071130 +
CM017656.1chromosomeCM017656.1:13314073..13314290 +
CM017643.1chromosomeCM017643.1:16689880..16690091 +
CM017708.1chromosomeCM017708.1:12663572..12663791 +
CM017695.1chromosomeCM017695.1:15849770..15849980 +
D08chromosomeD08:12742837..12743056 +
A08chromosomeA08:16825883..16826100 +
Chr08chromosomeChr08:17177928..17178141 +
Chr08chromosomeChr08:17206236..17206447 +
Chr08chromosomeChr08:12084296..12084533 +
B_08chromosomeB_08:17349932..17350143 +
Chr04chromosomeChr04:12510257..12510481 +
Chr_04chromosomeChr_04:9855055..9855596 +
Chr04chromosomeChr04:12514900..12515111 +
Chr04chromosomeChr04:9457612..9458285 +
F08chromosomeF08:14833600..14833813 +
Chr08chromosomeChr08:166502391..166502602 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0113_origDPL0113_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A53.45DPL0113View
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A44DPL0113View
3TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A63.3DPL0113View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A58.7DPL0113View
5TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A63.3DPL0113View
Sequence
>DPL0113 ID=DPL0113; Name=DPL0113; organism=Gossypium hirsutum; type=genetic_marker; length=218bp
AAGTTAGTAGCAGCAAATTCTGGCAAGCAAGCAGCAGCGCAGAATTAGAA
GGCAGACTCCGAGTGAGAGAGAGAGAGAGAGAGAGAGAAGTGAAAGATGG
TAAGAGGAAAAGCACTAAGCGCGTATAGGGCTCTTCTAAGAGCCACCCGC
AAATCATTTGCCGGCGACACCTTGATGTTGAACGCCTCTGCCGTTGAGGT
TCGTCAGAAATTTGAAGC