DPL0111, DPL0111 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0111
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0111_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0111_F: CTTTCATAATACATACGCCTTGCC
Primer 2DPL0111_R: TCACAGCATCCTATCAGGTATCAG
PolymorphismP_ DPL0111
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:10162537..10162741 -
A08chromosomeA08:11226585..11226797 -
CM018222.1chromosomeCM018222.1:9568781..9568997 -
CM018209.1chromosomeCM018209.1:10885409..10885615 -
D5_08chromosomeD5_08:9189753..9189998 -
KI_08chromosomeKI_08:6279887..6280083 -
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:12389758..12390004 -
D10_08chromosomeD10_08:53032065..53032273 +
CM016621.1chromosomeCM016621.1:128649076..128649282 +
Dt_chr4chromosomeDt_chr4:27551263..27551467 +
At_chr4chromosomeAt_chr4:88325079..88325289 +
D08chromosomeD08:9528798..9529002 -
A08chromosomeA08:10797578..10797790 -
Ghir_D08chromosomeGhir_D08:9579455..9579659 -
Ghir_A08chromosomeGhir_A08:11201428..11201648 -
D08chromosomeD08:9196920..9197124 -
A08chromosomeA08:10950688..10950900 -
D08chromosomeD08:9023472..9023676 -
A08chromosomeA08:11324174..11324386 -
D08chromosomeD08:9661202..9661406 -
A08chromosomeA08:11081775..11081995 -
scaffold42808supercontigscaffold42808:3705..3911 -
Gbar_D08chromosomeGbar_D08:9706511..9706725 -
Gbar_A08chromosomeGbar_A08:11266892..11267098 -
D08chromosomeD08:9774734..9774950 -
A08chromosomeA08:10952485..10952709 -
CM017630.1chromosomeCM017630.1:9799015..9799215 -
CM017617.1chromosomeCM017617.1:11324772..11324986 -
CM017656.1chromosomeCM017656.1:10171556..10171772 -
CM017643.1chromosomeCM017643.1:11724749..11724985 -
CM017708.1chromosomeCM017708.1:9642714..9642930 -
CM017695.1chromosomeCM017695.1:11106058..11106284 -
D08chromosomeD08:9764823..9765027 -
A08chromosomeA08:11767259..11767471 -
Chr08chromosomeChr08:12215374..12215600 -
Chr08chromosomeChr08:12505039..12505287 -
Chr08chromosomeChr08:9192840..9193065 -
B_08chromosomeB_08:12498091..12498293 -
Chr04chromosomeChr04:9556197..9556413 -
chr04chromosomechr04:8337689..8337907 -
Chr_04chromosomeChr_04:7584789..7584991 -
Chr04chromosomeChr04:9360771..9361027 -
Chr04chromosomeChr04:7528848..7529147 -
Chr04chromosomeChr04:6264187..6264405 -
Chr04chromosomeChr04:7441415..7441631 -
E08chromosomeE08:15029546..15029756 -
F08chromosomeF08:10071820..10072022 -
Chr08chromosomeChr08:178451547..178451751 +
Chr04chromosomeDPL0111:1..841 .
Chr04:9163841..9164707 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0111_origDPL0111_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A59.3DPL0111bView
2Monsanto SSR Bin Map, (2009)AD_ch08_At.08N/A121DPL0111bView
3TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A22.9DPL0111aView
4Monsanto SSR Bin Map, (2009)AD_ch24_Dt.08N/A81DPL0111aView
5W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A23.9MON-DPL0111View
6Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A55.5DPL0111View
7TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A59.29DPL0111bView
8TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A22.92DPL0111aView
Sequence
>DPL0111 ID=DPL0111; Name=DPL0111; organism=Gossypium hirsutum; type=genetic_marker; length=221bp
CTTTCATAATACATACGCCTTGCCTCTAGGGCAATATCCACACTTTTTTT
AAGCAAGTTTTCACTTTGTTCTCTAGAAAAGCCTTTTGCTTCAAACCCCT
GAATTGTGGCCTATTAAAAATATATAAATTTGCATCAGTTGGCAACGGGG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATTATATCTG
ATACCTGATAGGATGCTGTGA