DPL0101, DPL0101 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0101
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0101_orig
Source Typegenomic
Repeat Motif(TC)18
PCR ConditionAnnealing temperature: 55
Primer 1DPL0101_F: ACTTCAAGGAACAAGCCGAGTA
Primer 2DPL0101_R: ACATTCCGGTATGACAATCCTTAG
PolymorphismP_ DPL0101
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:6543542..6543715 -
A06chromosomeA06:6891376..6891553 -
CM018220.1chromosomeCM018220.1:5805513..5805686 -
CM018207.1chromosomeCM018207.1:7261880..7262049 -
D5_06chromosomeD5_06:5664331..5664490 -
KI_06chromosomeKI_06:4261618..4261785 -
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:5371667..5371844 -
D10_06chromosomeD10_06:54243829..54244015 +
CM016619.1chromosomeCM016619.1:137644906..137645055 +
Dt_chr10chromosomeDt_chr10:24951433..24952348 -
At_chr10chromosomeAt_chr10:66912542..66912719 -
scaffold176118supercontigscaffold176118:47..220 +
D06chromosomeD06:5558667..5558840 -
A06chromosomeA06:5834385..5834558 -
Ghir_D06chromosomeGhir_D06:6395464..6395637 -
Ghir_A06chromosomeGhir_A06:7275496..7275671 -
D06chromosomeD06:6158782..6158955 -
A06chromosomeA06:6923924..6924101 -
D06chromosomeD06:6379551..6379724 -
A06chromosomeA06:7192183..7192358 -
D06chromosomeD06:5899686..5899861 -
A06chromosomeA06:7126800..7126975 -
scaffold37049supercontigscaffold37049:11930..12103 +
Gbar_D06chromosomeGbar_D06:5820975..5821148 -
Gbar_A06chromosomeGbar_A06:7077155..7077324 -
D06chromosomeD06:5788407..5788580 -
A06chromosomeA06:7105724..7105893 -
CM017628.1chromosomeCM017628.1:6391485..6391666 -
CM017615.1chromosomeCM017615.1:7235906..7236081 -
CM017654.1chromosomeCM017654.1:5980237..5980410 -
CM017641.1chromosomeCM017641.1:7171349..7171540 -
CM017706.1chromosomeCM017706.1:5932052..5932227 -
CM017693.1chromosomeCM017693.1:7350148..7350319 -
D06chromosomeD06:6454660..6454833 -
A06chromosomeA06:7243208..7243385 -
Chr06chromosomeChr06:7212189..7212356 -
Chr06chromosomeChr06:7262628..7262807 -
Chr06chromosomeChr06:5550063..5550222 -
B_06chromosomeB_06:90377777..90377937 +
Chr10chromosomeChr10:6103304..6103469 -
Chr_10chromosomeChr_10:4933751..4933916 -
Chr10chromosomeChr10:6260647..6260800 -
Chr10_6029131chromosomeChr10_6029131:3967..4128 +
E06chromosomeE06:109508626..109508781 +
F06chromosomeF06:6068597..6068758 -
Chr06chromosomeChr06:192632326..192632479 +
Chr10chromosomeDPL0101:1..474 .
Chr10:5578287..5578747 -
Chr10chromosomeDPL0101:1..474 .
Chr10:3665394..3665854 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0101_origDPL0101_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A55.71DPL0101View
2AD-genome wide Reference Map (2009)AD_ch06_At.06N/A17DPL0101View
3TM-1 x 3-79, RIL (2012)AD_ch06_At.06N/A84.4DPL0101View
4TM-1 x 3-79, RIL (2014)AD_ch06_At.06N/A84.4DPL0101View
5(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.06N/A48.9DPL0101View
6TM-1 x 3-79, RIL (2012.v3)AD_ch06_At.06N/A84.4DPL0101View
Sequence
>DPL0101 ID=DPL0101; Name=DPL0101; organism=Gossypium hirsutum; type=genetic_marker; length=172bp
ACTTCAAGGAACAAGCCGAGTACACTCATTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCGCTGCTTACTTTTTACAGTCTCGAGAACTAGGTTT
TCAGTATCGGATTCATGGTTTGTGAAATTGCCTTTACCGAGTTGAATTCT
AAGGATTGTCATACCGGAATGT