DPL0100, DPL0100 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0100
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0100_orig
Source Typegenomic
Repeat Motif(AG)16
PCR ConditionAnnealing temperature: 55
Primer 1DPL0100_F: TATATGCTTGTGGGAGTAATGGTG
Primer 2DPL0100_R: CTTATGGCTCATCTATTAGGGCTTT
PolymorphismP_ DPL0100
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:54307585..54307735 -
A12chromosomeA12:92698217..92698381 -
CM018226.1chromosomeCM018226.1:51062731..51062881 -
CM018213.1chromosomeCM018213.1:89696700..89696852 -
D5_12chromosomeD5_12:8748030..8748180 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:10384337..10384501 +
D10_12chromosomeD10_12:46072388..46072540 -
CM016625.1chromosomeCM016625.1:13596381..13596537 +
At_chr3chromosomeAt_chr3:19462749..19462913 +
Dt_chr8chromosomeDt_chr8:47239382..47239532 -
D12chromosomeD12:50667116..50667266 -
A12chromosomeA12:78215448..78215612 -
Ghir_D12chromosomeGhir_D12:53522296..53522446 -
Ghir_A12chromosomeGhir_A12:97459369..97459533 -
D12chromosomeD12:52361281..52361431 -
A12chromosomeA12:97852430..97852594 -
D12chromosomeD12:53153400..53153550 -
A12chromosomeA12:95569895..95570059 -
D12chromosomeD12:51374363..51374513 -
A12chromosomeA12:92498940..92499104 -
Dt12chromosomeDt12:54007427..54007591 -
Dt12chromosomeDt12:54005529..54005693 -
scaffold3032supercontigscaffold3032:108246..108410 +
scaffold3032supercontigscaffold3032:100775..100939 +
scaffold27504supercontigscaffold27504:133819..133983 -
scaffold27504supercontigscaffold27504:131921..132085 -
Gbar_D12chromosomeGbar_D12:50394383..50394533 -
Gbar_A12chromosomeGbar_A12:92333354..92333506 -
D12chromosomeD12:51516787..51516937 -
A12chromosomeA12:91725188..91725340 -
CM017634.1chromosomeCM017634.1:51470177..51470327 -
CM017621.1chromosomeCM017621.1:92869212..92869376 -
CM017660.1chromosomeCM017660.1:54308685..54308835 -
CM017647.1chromosomeCM017647.1:96415832..96415996 -
CM017712.1chromosomeCM017712.1:52143774..52143924 -
CM017699.1chromosomeCM017699.1:92041961..92042113 -
D12chromosomeD12:53593083..53593233 -
A12chromosomeA12:99095501..99095665 -
Chr12chromosomeChr12:99821014..99821182 -
Chr12chromosomeChr12:106960147..106960311 -
Chr12chromosomeChr12:49036727..49036877 -
B_12chromosomeB_12:78322172..78322328 -
Chr08chromosomeChr08:49357951..49358125 -
chr08chromosomechr08:38208053..38208203 -
Chr_08chromosomeChr_08:36042169..36042487 -
Chr08chromosomeChr08:50796031..50796183 -
Chr08chromosomeChr08:34967571..34967721 -
Chr08chromosomeChr08:27527648..27527808 -
Chr08chromosomeChr08:33836821..33836967 -
E12chromosomeE12:103174400..103174550 -
F12chromosomeF12:82202319..82202482 -
Chr12chromosomeChr12:3652838..3652992 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0100_origDPL0100_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A87.21DPL0100View
2TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A87.2DPL0100View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A107.1DPL0100View
4TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A87.21DPL0100View
Sequence
>DPL0100 ID=DPL0100; Name=DPL0100; organism=Gossypium hirsutum; type=genetic_marker; length=165bp
TATATGCTTGTGGGAGTAATGGTGAAAGATCAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGACTACAATTGTTATTATGATTTTTTGGAGTTACCTTA
ACAATCTAGAAAATGGGGATCTTCACCAAAACTATAGTAAAAAGCCCTAA
TAGATGAGCCATAAG