DPL0095, DPL0095 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0095
AliasDPL095
Genbank IDGQ394846
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Delta Opal
Source SequenceGQ394846
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0095_F: ATTGATGACCTGTAGATGACGATG
Primer 2DPL0095_R: GTTTGCTTGCAGTATAAGATGGTG
PolymorphismP_ DPL0095
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394846
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A03chromosomeA03:7847445..7847623 +
D03chromosomeD03:44957780..44957974 -
CM018204.1chromosomeCM018204.1:7759208..7759423 +
CM018217.1chromosomeCM018217.1:45281130..45281302 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:104973850..104974047 +
D10_02chromosomeD10_02:43603632..43603798 -
CM016615.1chromosomeCM016615.1:103477336..103477502 +
Dt_chr3chromosomeDt_chr3:18358455..18358649 -
At_chr5chromosomeAt_chr5:6709166..6709347 -
scaffold515_A03supercontigscaffold515_A03:187378..187559 -
D03chromosomeD03:39023045..39023225 -
Ghir_A03chromosomeGhir_A03:8691063..8691242 +
Ghir_D03chromosomeGhir_D03:44738401..44738591 -
A03chromosomeA03:8213440..8213621 +
D03chromosomeD03:46251422..46251616 -
A03chromosomeA03:8662229..8662410 +
D03chromosomeD03:45735424..45735616 -
A03chromosomeA03:8080172..8080353 +
D03chromosomeD03:45042457..45042651 -
Dt03chromosomeDt03:41940839..41941011 -
scaffold10280supercontigscaffold10280:73046..73218 -
Gbar_A03chromosomeGbar_A03:7692289..7692496 +
Gbar_D03chromosomeGbar_D03:43704116..43704288 -
A03chromosomeA03:7882604..7882809 +
D03chromosomeD03:46187478..46187650 -
CM017612.1chromosomeCM017612.1:8226412..8226599 +
CM017625.1chromosomeCM017625.1:44530881..44531087 -
CM017638.1chromosomeCM017638.1:8638099..8638316 +
CM017651.1chromosomeCM017651.1:48648999..48649209 -
CM017690.1chromosomeCM017690.1:8092967..8093182 +
CM017703.1chromosomeCM017703.1:46168521..46168741 -
A03chromosomeA03:8755665..8755846 +
D03chromosomeD03:46996014..46996208 -
Chr02chromosomeChr02:7737926..7738129 +
Chr01chromosomeChr01:110349341..110349540 -
Chr02chromosomeChr02:41239800..41239976 -
Chr_03chromosomeChr_03:24093022..24093310 -
Chr03chromosomeChr03:44580621..44580812 -
Chr03chromosomeChr03:24504370..24504542 +
Chr03chromosomeChr03:24473663..24473961 -
F02chromosomeF02:68833254..68833430 -
Chr02chromosomeChr02:12056386..12056556 -
Germplasm
Stock NameType
Delta Opalaccession
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394846GQ394846Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A31.4DPL0095bView
2Monsanto SSR Bin Map, (2009)AD_ch03_At.03N/A61DPL0095bView
3TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A61.9DPL0095aView
4Monsanto SSR Bin Map, (2009)AD_ch17_Dt.03N/A61DPL0095aView
5Baimian 1 x TM-1 , F2:3 (2014)AD_ch03_At.03N/A0DPL0095View
60-153 x sGK9708, RIL (2016)AD_ch17_Dt.03N/A48.1DPL0095View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A165.1DPL0095View
8DH962 X Ji Mian 5, F2 (2015)AD_ch17_Dt.03N/A51.18MON_DPL0095View
9DH962 x Ji Mian 5, RIL (2015)AD_ch17_Dt.03N/A0MON_DPL0095View
10CCRI-35 x Yumian-1, RIL (2017)AD_ch17_Dt.03N/A61.73DPL0095View
11TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A31.36DPL0095bView
12TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A61.92DPL0095aView
Sequence
>DPL0095 ID=DPL0095; Name=DPL0095; organism=Gossypium hirsutum; type=genetic_marker; length=178bp
ATTGATGACCTGTAGATGACGATGTTTTATGTAATTCAGTAGCATGAGCG
AAAGATGGTGTTTATTCCTGGAATTAAACTAATGTCATTAAAACGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAATAAAACGTTGTTGAATCAGCTTTCT
TGTTCACCATCTTATACTGCAAGCAAAC