DPL0079, DPL0079 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0079
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0079_orig
Source Typegenomic
Repeat Motif(TC)10
PCR ConditionAnnealing temperature: 55
Primer 1DPL0079_F: GTAAAGATGAGACTGTGAGGGCTT
Primer 2DPL0079_R: TCATTCCAAGAAGCAGAAGACTAAC
PolymorphismP_ DPL0079
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:15245182..15245302 -
CM018223.1chromosomeCM018223.1:13866122..13866232 -
CM016622.1chromosomeCM016622.1:68163149..68163263 +
Dt_chr6chromosomeDt_chr6:28915812..28915932 +
D09chromosomeD09:14959419..14959539 -
Scaffold1333supercontigScaffold1333:43046..43142 +
Ghir_D09chromosomeGhir_D09:15015076..15015196 -
D09chromosomeD09:14569002..14569122 -
D09chromosomeD09:14647820..14647940 -
D09chromosomeD09:14449477..14449597 -
Dt09chromosomeDt09:15518254..15518364 -
Dt09chromosomeDt09:15510047..15510157 -
scaffold1105supercontigscaffold1105:238130..238226 +
scaffold28774supercontigscaffold28774:99384..99494 -
scaffold28774supercontigscaffold28774:91177..91287 -
Gbar_D09chromosomeGbar_D09:15139147..15139257 -
Gbar_A09chromosomeGbar_A09:30367418..30367514 -
D09chromosomeD09:16227785..16227895 -
CM017631.1chromosomeCM017631.1:14026227..14026351 -
CM017657.1chromosomeCM017657.1:13890975..13891119 -
CM017709.1chromosomeCM017709.1:14252818..14252928 -
D09chromosomeD09:15161769..15161889 -
Chr09chromosomeChr09:14427433..14427569 -
B_09chromosomeB_09:18191230..18191347 -
chr06chromosomechr06:12079157..12079357 -
Chr_06chromosomeChr_06:10837939..10838141 -
Chr06chromosomeChr06:14153536..14153640 +
Chr06chromosomeChr06:8346514..8346620 -
Chr06chromosomeChr06:10344364..10344585 -
E09chromosomeE09:61012213..61012331 +
F09chromosomeF09:16924683..16924795 -
Chr06chromosomeDPL0079:1..818 .
Chr06:14401566..14402399 -
Chr13chromosomeDPL0079:1..818 .
Chr13:31323135..31324043 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0079_origDPL0079_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch23_Dt.09N/A53.46DPL0079View
2AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A60DPL0079View
3TM-1 x 3-79, RIL (2012)AD_ch23_Dt.09N/A107.25DPL0079View
4TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A36.4DPL0079View
5TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A36.41DPL0079View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch23_Dt.09N/A60.9DPL0079View
Sequence
>DPL0079 ID=DPL0079; Name=DPL0079; organism=Gossypium hirsutum; type=genetic_marker; length=121bp
GTAAAGATGAGACTGTGAGGGCTTGGGATACCAACACTGGTCAGGTGTGA
TTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTATGGCAGTTTTAGTTA
GTCTTCTGCTTCTTGGAATGA