DPL0075, DPL0075 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0075
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0075_orig
Source Typegenomic
Repeat Motif(CT)20
PCR ConditionAnnealing temperature: 55
Primer 1DPL0075_F: GAGGTCATTTCAGTCCAACTCTTT
Primer 2DPL0075_R: AGAGACCGGAAGAATTTCGAGTAT
PolymorphismP_ DPL0075
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:24049970..24050180 -
A06chromosomeA06:37082785..37082987 -
CM018220.1chromosomeCM018220.1:22536786..22536966 -
CM018207.1chromosomeCM018207.1:36488916..36489120 -
D5_06chromosomeD5_06:22818007..22818193 -
KI_06chromosomeKI_06:11927285..11927453 -
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:40322030..40322249 -
D10_06chromosomeD10_06:39166563..39166758 +
CM016619.1chromosomeCM016619.1:93441253..93441435 +
At_chr10chromosomeAt_chr10:83394597..83394799 -
D06chromosomeD06:22917963..22918328 -
Ghir_D06chromosomeGhir_D06:23505606..23505814 -
Ghir_A06chromosomeGhir_A06:38404351..38404551 -
D06chromosomeD06:22910906..22911116 -
A06chromosomeA06:37444390..37444592 -
D06chromosomeD06:23448870..23449083 -
A06chromosomeA06:37713044..37713247 -
D06chromosomeD06:23010095..23010305 -
A06chromosomeA06:37559554..37559758 -
Dt06chromosomeDt06:22512646..22512826 -
scaffold1318supercontigscaffold1318:245688..245890 +
scaffold3314supercontigscaffold3314:1244727..1244907 -
Gbar_D06chromosomeGbar_D06:22711665..22711845 -
Gbar_A06chromosomeGbar_A06:36229426..36229626 -
D06chromosomeD06:22439857..22440037 -
A06chromosomeA06:36524029..36524231 -
CM017628.1chromosomeCM017628.1:23243140..23243326 -
CM017615.1chromosomeCM017615.1:37630054..37630256 -
CM017654.1chromosomeCM017654.1:22894900..22895096 -
CM017641.1chromosomeCM017641.1:38719491..38719695 -
CM017706.1chromosomeCM017706.1:22714893..22715073 -
CM017693.1chromosomeCM017693.1:37097031..37097263 -
D06chromosomeD06:23758847..23759057 -
A06chromosomeA06:38578775..38578977 -
Chr06chromosomeChr06:40012369..40012575 -
Chr06chromosomeChr06:41307061..41307280 -
Chr06chromosomeChr06:22643215..22643401 -
B_06chromosomeB_06:62921560..62921742 +
Chr10chromosomeChr10:23061220..23061427 -
chr10chromosomechr10:19503686..19503905 -
Chr_10chromosomeChr_10:17691992..17692313 -
Chr10chromosomeChr10:16097009..16097209 -
Chr10_3472874chromosomeChr10_3472874:23679..23867 +
Chr10chromosomeChr10:16805232..16805509 -
E06chromosomeE06:78551867..78552057 +
F06chromosomeF06:36545781..36545967 -
Chr06chromosomeChr06:125152322..125152508 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0075_origDPL0075_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A121DPL0075View
2TM-1 x 3-79, RIL (2012)AD_ch25_Dt.06N/A58.73DPL0075View
3Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A70.69DPL0075View
4Yumian-1 x 7235, RIL (2015)AD_ch06_At.06N/A27.9DPL0075View
5TM-1 x 3-79, RIL (2014)AD_ch25_Dt.06N/A54.6DPL0075View
6Emian-22 x 3-79, BC1 (2015)AD_ch25_Dt.06N/A90.8DPL0075View
7SG 747 x Giza 75, BIL (2013)AD_ch25_Dt.06N/A20.2DPL0075View
8TM-1 x 3-79, RIL (2012.v3)AD_ch25_Dt.06N/A54.61DPL0075View
Sequence
>DPL0075 ID=DPL0075; Name=DPL0075; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
GAGGTCATTTCAGTCCAACTCTTTACTTCGTGGAAGAGGTTATCACTGGT
TTCGACGAGACCGATCTCCACCGTTCTTGGATTCGAGTACGGTTTCGTTT
TCACCTTCTTTTTGGCTGTTCTCACTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCCTAAACATAGTAATACTCGAAATTCTTCCGGTCTC
T