DPL0067, DPL0067 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0067
AliasDPL067
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Delta Opal
Source SequenceDPL0067_orig
Source Typegenomic
Repeat Motif(AG)18
PCR ConditionAnnealing temperature: 55
Primer 1DPL0067_F: CTGGTGTCATTGCCAAGAGATA
Primer 2DPL0067_R: ACTCCATTAATTAGGACCTTTGCC
PolymorphismP_ DPL0067
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:19373438..19373566 -
CM018220.1chromosomeCM018220.1:18186919..18187040 -
D10_06chromosomeD10_06:43477344..43477460 +
CM016619.1chromosomeCM016619.1:104853183..104853304 +
D06chromosomeD06:18463476..18463607 -
Ghir_D06chromosomeGhir_D06:19105995..19106124 -
D06chromosomeD06:18602845..18602976 -
D06chromosomeD06:19075675..19075801 -
D06chromosomeD06:18603503..18603634 -
scaffold12216supercontigscaffold12216:19158..19279 +
Gbar_D06chromosomeGbar_D06:18368814..18368935 -
D06chromosomeD06:18114131..18114252 -
CM017628.1chromosomeCM017628.1:18908284..18908423 -
CM017706.1chromosomeCM017706.1:18402514..18402634 -
D06chromosomeD06:19274857..19274988 -
B_06chromosomeB_06:69266674..69266812 +
Chr10chromosomeChr10:18845452..18845573 -
Chr_10chromosomeChr_10:14631486..14631697 -
Chr10chromosomeChr10:19588519..19588648 -
Chr10chromosomeChr10:13096407..13096638 -
Chr10chromosomeDPL0067:1..284 .
Chr10:18205949..18206212 -
scaffold194supercontigDPL0067:1..284 .
scaffold194:660575..660838 +
Germplasm
Stock NameType
Delta Opalaccession
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0067_origDPL0067_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A101DPL0067View
2TM-1 x 3-79, RIL (2012)AD_ch25_Dt.06N/A64.88DPL0067View
3Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A73.66DPL0067View
4TM-1 x 3-79, RIL (2014)AD_ch25_Dt.06N/A60.8DPL0067View
50-153 x sGK9708, RIL (2015)AD_ch25_Dt.06N/A44DPL0067View
60-153 x sGK9708, RIL (2016)AD_ch25_Dt.06N/A137DPL0067View
7TM-1 x 3-79, RIL (2012.v3)AD_ch25_Dt.06N/A60.83DPL0067View
8PD 94042 x (AD)4-08, F2 (2016)AD_ch25_Dt.06N/A88DPL0067View
Sequence
>DPL0067 ID=DPL0067; Name=DPL0067; organism=Gossypium hirsutum; type=genetic_marker; length=132bp
CTGGTGTCATTGCCAAGAGATAAAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAAGATATTAAAAAAAAATCAGAGAATTAGGCTACGGAAAT
GGGATAGGGGCAAAGGTCCTAATTAATGGAGT