DPL0052, DPL0052 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0052
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0052_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0052_F: GCTTACGTGTATGATTAAATCGCC
Primer 2DPL0052_R: CAGAGGACTTGTAAACAACACTGC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Germplasm
Stock NameType
Delta Opalcultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
DPL0052_FDPL0052_FGossypium hirsutumprimer
DPL0052_RDPL0052_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber elongationqFEL.DJiM-RIL_ch01.j09.1Gossypium hirsutumQTL
fiber elongationqFEL.DJiM-RIL_ch01.j09.2Gossypium hirsutumQTL
fiber elongationqFEL.DJiM-RIL_ch15.j09.1Gossypium hirsutumQTL
fiber elongationqFEL.DJiM-RIL_ch15.j09.2Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0052bDPL0052bGossypium hirsutummarker_locus
DPL0052aDPL0052aGossypium hirsutummarker_locus
DPL0052DPL0052Gossypium hirsutummarker_locus
MON_DPL0052MON_DPL0052Gossypium hirsutummarker_locus
MON-DPL0052MON-DPL0052Gossypium hirsutummarker_locus
DPL0052bDPL0052b-88.945Gossypium hirsutummarker_locus
DPL0052aDPL0052a-62.606Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0052_origDPL0052_origGossypium hirsutumsequence_feature


Contact
NameDetails
Monsanto
Country:United States
Sequence
>DPL0052 ID=DPL0052|Name=DPL0052|organism=Gossypium hirsutum|type=genetic_marker|length=242bp
GCTTACGTGTATGATTAAATCGCCGGATTGGGATTCCGAATTTGCCAAAG
CCAAAGCCAGCCATAGCCCGAGCGCGAGGGGCCACCGATCTCATCTTCAA
CTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACA
CATACACATATTCGTTAGCGCCTCTCTTAAAACCTTTAATATTTCTTGAT
GCTATTTTAAAGTTGATTGCAGTGTTGTTTACAAGTCCTCTG
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr01N/AAD_chr.01110DPL0052bView
2TM-1 x 3-79, RIL (2014)T3-RIL.14_chr01N/AAD_chr.0188.9DPL0052bView
3Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr15N/AAD_chr.1570DPL0052aView
4TM-1 x 3-79, RIL (2014)T3-RIL.14_chr15N/AAD_chr.1562.6DPL0052aView
5Yumian-1 x T586, RIL (2015)YT-RIL.15_chr01N/AAD_chr.0144.9DPL0052View
6CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr01N/AAt.0156.6DPL0052View
7CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr15N/ADt.0193.4DPL0052View
8DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr01N/AAD_chr.0158.83MON_DPL0052View
9DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr15-1N/AAD_chr.1558.83MON_DPL0052View
10DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr01N/AAD_chr.0144.7MON_DPL0052View
11DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr15N/AAD_chr.1544.7MON_DPL0052View
12W10 x TM-1, F2:3 (2015)WT-F2:3_chr01-1N/AAD_chr.0151.6MON-DPL0052View
13TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.01N/AAD_chr.0188.95DPL0052b-88.945View
14TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.15N/AAD_chr.1562.61DPL0052a-62.606View