DPL0046, DPL0046 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0046
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0046_orig
Source Typegenomic
Repeat Motif(TC)16
PCR ConditionAnnealing temperature: 55
Primer 1DPL0046_F: GTAATTTCCTTGGCGAGAAGAAG
Primer 2DPL0046_R: AACAGCATCGTACGCTTGAATAG
PolymorphismP_ DPL0046
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:34202081..34202294 +
A02chromosomeA02:41368748..41368975 -
CM018217.1chromosomeCM018217.1:34839894..34840107 +
CM018203.1chromosomeCM018203.1:39902688..39902915 -
D5_02chromosomeD5_02:28923682..28923895 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:86584329..86584555 +
D10_02chromosomeD10_02:33439538..33439755 +
CM016615.1chromosomeCM016615.1:78401269..78401480 +
scaffold8219.1supercontigscaffold8219.1:3415..3640 +
Dt_chr3chromosomeDt_chr3:17279385..17279598 -
At_chr3chromosomeAt_chr3:18324804..18325031 -
D03chromosomeD03:28335250..28335463 +
A02chromosomeA02:38576534..38576761 -
Ghir_D03chromosomeGhir_D03:34260448..34260661 +
Ghir_A02chromosomeGhir_A02:42499013..42499240 -
D03chromosomeD03:35868038..35868251 +
A02chromosomeA02:40774191..40774418 -
D03chromosomeD03:35198635..35198848 +
A02chromosomeA02:41031148..41031373 -
D03chromosomeD03:34624182..34624395 +
A02chromosomeA02:40550133..40550360 -
scaffold11727supercontigscaffold11727:554621..554850 +
scaffold8261supercontigscaffold8261:78213..78426 -
scaffold8261supercontigscaffold8261:75450..75663 -
Gbar_D03chromosomeGbar_D03:33253863..33254076 +
Gbar_A02chromosomeGbar_A02:40441540..40441767 -
D03chromosomeD03:35859550..35859763 +
A02chromosomeA02:40861828..40862051 -
CM017625.1chromosomeCM017625.1:34234041..34234254 +
CM017651.1chromosomeCM017651.1:38153622..38153836 +
CM017637.1chromosomeCM017637.1:42633195..42633421 -
CM017703.1chromosomeCM017703.1:35637637..35637851 +
CM017689.1chromosomeCM017689.1:40664559..40664791 -
D03chromosomeD03:36262936..36263149 +
A02chromosomeA02:41912104..41912331 -
Chr02chromosomeChr02:25510684..25510909 -
Chr01chromosomeChr01:92509143..92509369 +
B_04chromosomeB_04:22700376..22700585 -
Chr03chromosomeChr03:32578843..32579056 +
chr03chromosomechr03:13693010..13693225 -
Chr_03chromosomeChr_03:11094216..11094433 -
Chr03chromosomeChr03:34301624..34301838 +
Chr03chromosomeChr03:11465010..11465224 -
Chr03chromosomeChr03:9934738..9934945 -
E02chromosomeE02:60589881..60590095 -
F02chromosomeF02:54391995..54392210 +
Chr02chromosomeChr02:43615658..43615876 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0046_origDPL0046_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A63.2DPL0046View
2Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A75.52DPL0046View
3AD-genome wide Reference Map (2009)AD_ch02_At.02N/A109DPL0046View
4Yumian-1 x T586, RIL (2015)AD_ch19_Dt.05N/A85.3DPL0046View
5TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A64.2DPL0046View
6TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A64.21DPL0046View
Sequence
>DPL0046 ID=DPL0046; Name=DPL0046; organism=Gossypium hirsutum; type=genetic_marker; length=226bp
GTAATTTCCTTGGCGAGAAGAAGGTCTTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCCGTTCTTTTAATCTCTTATTGAATCGAAATCACATTGACAC
TGTTGATTTAATTCCCTTTATTTGTTTTTTTTTGTTTGAATAAGGCATTT
ATTATTGTTTTTATCATATATTAGGGCTTTTTTTGTTTCATTTTCTTTTT
GGCCTATTCAAGCGTACGATGCTGTT