DPL0035, DPL0035 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0035
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0035_orig
Source Typegenomic
Repeat Motif(GA)14
PCR ConditionAnnealing temperature: 55
Primer 1DPL0035_F: CATGGTTGTACCGGTTAGTATGTG
Primer 2DPL0035_R: CAGCAATGAGACCATTGTATACCC
PolymorphismP_ DPL0035
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:6256467..6256605 -
A06chromosomeA06:6523825..6523971 -
CM018220.1chromosomeCM018220.1:5533473..5533611 -
CM018207.1chromosomeCM018207.1:6888678..6888820 -
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:4995399..4995539 -
D10_06chromosomeD10_06:54556429..54556565 +
CM016619.1chromosomeCM016619.1:138016131..138016267 +
Dt_chr10chromosomeDt_chr10:24654608..24654746 -
At_chr10chromosomeAt_chr10:66526232..66526378 -
scaffold93904supercontigscaffold93904:88..226 -
D06chromosomeD06:5268491..5268629 -
A06chromosomeA06:5452490..5452636 -
Ghir_D06chromosomeGhir_D06:6103000..6103138 -
Ghir_A06chromosomeGhir_A06:6867836..6867982 -
D06chromosomeD06:5869087..5869225 -
A06chromosomeA06:6561525..6561671 -
D06chromosomeD06:6079560..6079698 -
A06chromosomeA06:6809778..6809924 -
D06chromosomeD06:5599401..5599539 -
A06chromosomeA06:6735259..6735405 -
Gbar_D06chromosomeGbar_D06:5548957..5549095 -
Gbar_A06chromosomeGbar_A06:6703937..6704079 -
D06chromosomeD06:5515587..5515725 -
A06chromosomeA06:6748972..6749114 -
CM017628.1chromosomeCM017628.1:6107339..6107477 -
CM017615.1chromosomeCM017615.1:6860218..6860360 -
CM017654.1chromosomeCM017654.1:5693607..5693745 -
CM017641.1chromosomeCM017641.1:6797907..6798045 -
CM017706.1chromosomeCM017706.1:5644337..5644475 -
CM017693.1chromosomeCM017693.1:6973007..6973149 -
D06chromosomeD06:6181316..6181454 -
A06chromosomeA06:6860854..6861000 -
Chr06chromosomeChr06:6804070..6804208 -
Chr06chromosomeChr06:6876404..6876544 -
Chr06chromosomeChr06:5266236..5266372 -
B_06chromosomeB_06:90720317..90720453 +
Chr10chromosomeChr10:5783575..5783709 -
chr10chromosomechr10:5040931..5041067 -
Chr_10chromosomeChr_10:4650181..4650317 -
Chr10chromosomeChr10:5958335..5958471 -
Chr10chromosomeChr10:3637461..3637597 -
Chr10chromosomeChr10:4578834..4578970 -
E06chromosomeE06:110082903..110083044 +
F06chromosomeF06:5774941..5775079 -
Chr10chromosomeDPL0035:1..602 .
Chr10:5295253..5295842 -
Chr10chromosomeDPL0035:1..602 .
Chr10:3377198..3377787 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0035_origDPL0035_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A31.64DPL0035View
2TM-1 x 3-79, RIL (2012)AD_ch06_At.06N/A85.09DPL0035View
3TM-1 x 3-79, RIL (2014)AD_ch06_At.06N/A85.1DPL0035View
4TM-1 x 3-79, RIL (2012.v3)AD_ch06_At.06N/A85.09DPL0035View
Sequence
>DPL0035 ID=DPL0035; Name=DPL0035; organism=Gossypium hirsutum; type=genetic_marker; length=149bp
CATGGTTGTACCGGTTAGTATGTGCACCCTACACCCATAAACCGTTACTC
ATTGCAAACAGTGTTTGAGTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGA
AGATACCATATTAGAAGGAAGGTTGGGGTATACAATGGTCTCATTGCTG