DPL0033, DPL0033 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0033
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0033_orig
Source Typegenomic
Repeat Motif(GA)15
PCR ConditionAnnealing temperature: 55
Primer 1DPL0033_F: AGTTTCTTGAACTGGGAGGTGAT
Primer 2DPL0033_R: CCAATGGCATAGTCATCATACATC
PolymorphismP_ DPL0033
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:12587749..12587876 +
CM018227.1chromosomeCM018227.1:11855983..11856102 +
CM018214.1chromosomeCM018214.1:18173930..18174068 +
D5_13chromosomeD5_13:11736181..11736294 +
KI_13chromosomeKI_13:5873701..5873826 +
D10_13chromosomeD10_13:11882758..11882887 +
CM016626.1chromosomeCM016626.1:53398880..53399027 +
Dt_chr13chromosomeDt_chr13:48223771..48223898 +
D13chromosomeD13:12172612..12172739 +
scaffold20224supercontigscaffold20224:878..1005 -
Ghir_D13chromosomeGhir_D13:12147509..12147634 +
D13chromosomeD13:11871230..11871357 +
D13chromosomeD13:12370148..12370275 +
D13chromosomeD13:12046162..12046289 +
At13chromosomeAt13:18512560..18512698 +
scaffold3859supercontigscaffold3859:338056..338194 +
scaffold27631supercontigscaffold27631:23544..23663 -
scaffold27631supercontigscaffold27631:20476..20595 -
Gbar_D13chromosomeGbar_D13:12047508..12047627 +
D13chromosomeD13:11452919..11453038 +
A13chromosomeA13:18225112..18225250 +
CM017635.1chromosomeCM017635.1:11900623..11900748 +
CM017661.1chromosomeCM017661.1:12476079..12476202 +
CM017713.1chromosomeCM017713.1:12046507..12046624 +
D13chromosomeD13:12540738..12540865 +
Chr13chromosomeChr13:11649171..11649284 +
B_13chromosomeB_13:78753002..78753149 -
chr13chromosomechr13:9989582..9989691 +
Chr_13chromosomeChr_13:9904526..9904655 +
Chr13chromosomeChr13:7423432..7423567 +
Chr13chromosomeChr13:9960480..9960619 +
F13chromosomeF13:16131517..16131689 +
Chr13chromosomeChr13:139307405..139307553 -
Chr13chromosomeDPL0033:1..705 .
Chr13:23442596..23443280 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0033_origDPL0033_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch18_Dt.13N/A39.12DPL0033View
2TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A41DPL0033View
3TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A40.95DPL0033View
4PD 94042 x (AD)4-08, F2 (2016)AD_ch18_Dt.13N/A176.5DPL0033View
Sequence
>DPL0033 ID=DPL0033; Name=DPL0033; organism=Gossypium hirsutum; type=genetic_marker; length=128bp
AGTTTCTTGAACTGGGAGGTGATGCAGAGATTTTTCTGAAATGGATGGCT
TATATATATATCAATTCTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GATGGATGTATGATGACTATGCCATTGG