DPL0022, DPL0022 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0022
Genbank IDGQ394810
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394810
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0022_F: GGTGGGTTCTTCTGCAGGTATATT
Primer 2DPL0022_R: CCCTTTCAATGCTAGAAAGAAGTTG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394810
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:5703359..5703606 +
CM018219.1chromosomeCM018219.1:5238258..5238507 +
CM018206.1chromosomeCM018206.1:6140875..6141084 +
D5_05chromosomeD5_05:5008297..5008516 +
KI_05chromosomeKI_05:4615403..4615647 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:6185611..6185825 +
D10_05chromosomeD10_05:55473908..55474149 -
CM016626.1chromosomeCM016626.1:8903184..8903465 +
At_chr9chromosomeAt_chr9:55260673..55260922 -
D05chromosomeD05:5431145..5431394 +
A05chromosomeA05:5862819..5863068 +
Ghir_D05chromosomeGhir_D05:5548379..5548624 +
Ghir_A05chromosomeGhir_A05:6282139..6282384 +
D05chromosomeD05:5347951..5348202 +
A05chromosomeA05:6098307..6098556 +
D05chromosomeD05:5479744..5479997 +
A05chromosomeA05:6252716..6252965 +
D05chromosomeD05:5372738..5372961 +
A05chromosomeA05:6656545..6656792 +
At05chromosomeAt05:4172219..4172428 +
scaffold15361supercontigscaffold15361:62054..62263 +
C30140408supercontigC30140408:138..347 +
Gbar_D05chromosomeGbar_D05:5456028..5456275 +
Gbar_A05chromosomeGbar_A05:5827394..5827603 +
D05chromosomeD05:5555684..5555933 +
A05chromosomeA05:6393910..6394119 +
CM017627.1chromosomeCM017627.1:5394519..5394746 +
CM017614.1chromosomeCM017614.1:6257348..6257600 +
CM017653.1chromosomeCM017653.1:5722314..5722533 +
CM017640.1chromosomeCM017640.1:6270097..6270330 +
CM017705.1chromosomeCM017705.1:5444306..5444543 +
CM017692.1chromosomeCM017692.1:6154445..6154670 +
D05chromosomeD05:5514324..5514575 +
A05chromosomeA05:6427351..6427600 +
Chr05chromosomeChr05:6566769..6567014 +
Chr05chromosomeChr05:6060269..6060484 +
Chr05chromosomeChr05:5039904..5040123 +
B_05chromosomeB_05:80045068..80045297 -
Chr09chromosomeChr09:5162757..5162962 +
chr09chromosomechr09:4869647..4870035 +
Chr_09chromosomeChr_09:5211584..5211897 +
Chr09chromosomeChr09:5343005..5343222 +
Chr09chromosomeChr09:4874473..4874678 +
Chr09chromosomeChr09:4077758..4077981 +
Chr09chromosomeChr09:4766285..4766494 +
E05chromosomeE05:6558395..6558613 +
F05chromosomeF05:5237875..5238080 +
Chr13chromosomeChr13:191824237..191824462 -
Chr09chromosomeDPL0022:1..644 .
Chr09:4986805..4987418 +
scaffold450supercontigDPL0022:1..644 .
scaffold450:16731..17344 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394810GQ394810Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Baimian 1 x TM-1 , F2:3 (2014)AD_ch19_Dt.05N/A0DPL0022View
2TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A169.5DPL0022View
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch05_At.05N/A34.4DPL0022View
4GX1135 x GX100-2, RIL (2015)AD_ch05_At.05N/A132.2DPL0022View
5GX1135 x GX100-2, RIL (2016)AD_ch05_At.05N/A132.2DPL0022View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A183.8DPL0022View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A97.2DPL0022View
8LMY28 x XLZ24, RIL (2018)AD_ch19_Dt.05N/A17.22DPL0022View
9Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A161DPL0022View
10(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch19_Dt.05N/A6.2MON_DPL0022View
11GX1135 x GX100-2, F2 (2013)AD_ch05_At.05N/A0DPL022View
12CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A38.52DPL0022View
13TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A169.51DPL0022View
14TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A174.3dPL0022-210View
Sequence
>DPL0022 ID=DPL0022; Name=DPL0022; organism=Gossypium hirsutum; type=genetic_marker; length=250bp
GGTGGGTTCTTCTGCAGGTATATTATAATTATTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTTTTCTG
CAAATCTCTTTGTTTTGGGCATGAAAAATTATTGTTAGGTTTTGGGTAGT
GTTTAGAATCATTTGTTTAAAATTCAGATCTCATTCATGATTTACTTCGA
AAAGGAAGAAGGTTAAAATAAAATGCAACTTCTTTCTAGCATTGAAAGGG