DPL0022, DPL0022 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0022
Genbank IDGQ394810
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394810
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0022_F: GGTGGGTTCTTCTGCAGGTATATT
Primer 2DPL0022_R: CCCTTTCAATGCTAGAAAGAAGTTG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Germplasm
Stock NameType
Delta Opalcultivar
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394810
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
DPL0022_FDPL0022_FGossypium hirsutumprimer
DPL0022_RDPL0022_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
2.5 span lengthqSL2.5.GG-RIL.15_ch05-1.xy12.3Gossypium hirsutumQTL
2.5 span lengthqSL2.5.GG-RIL.16_ch05.xy12.6Gossypium hirsutumQTL
fiber lengthqFL.LX-RIL_ch19.13LQGossypium hirsutumQTL
fiber strengthqFS.LX-RIL_ch19.15ALEGossypium hirsutumQTL
2.5 span lengthqSL2.5.GG-RIL.16_ch05.wh15.3Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0022DPL0022Gossypium hirsutummarker_locus
MON_DPL0022MON_DPL0022Gossypium hirsutummarker_locus
DPL022DPL022Gossypium hirsutummarker_locus
DPL0022DPL0022-38.518Gossypium hirsutummarker_locus
DPL0022DPL0022-169.512Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394810GQ394810Gossypium hirsutumsequence_feature


Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:5703359..5703606 +
CM018219.1chromosomeCM018219.1:5238258..5238507 +
CM018206.1chromosomeCM018206.1:6140875..6141084 +
D5_05chromosomeD5_05:5008297..5008516 +
KI_05chromosomeKI_05:4615403..4615647 +
Chr4chromosomeChr4:33978388..33978603 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:6185611..6185825 +
scaffold450supercontigscaffold450:16851..17070 -
D10_05chromosomeD10_05:55473908..55474149 -
CM016626.1chromosomeCM016626.1:8903184..8903465 +
At_chr9chromosomeAt_chr9:55260673..55260922 -
D05chromosomeD05:5431145..5431394 +
A05chromosomeA05:5862819..5863068 +
Ghir_D05chromosomeGhir_D05:5548379..5548624 +
Ghir_A05chromosomeGhir_A05:6282139..6282384 +
D05chromosomeD05:5347951..5348202 +
A05chromosomeA05:6098307..6098556 +
D05chromosomeD05:5479744..5479997 +
A05chromosomeA05:6252716..6252965 +
D05chromosomeD05:5372738..5372961 +
A05chromosomeA05:6656545..6656792 +
At05chromosomeAt05:4172219..4172428 +
scaffold15361supercontigscaffold15361:62054..62263 +
C30140408supercontigC30140408:138..347 +
Gbar_D05chromosomeGbar_D05:5456028..5456275 +
Gbar_A05chromosomeGbar_A05:5827394..5827603 +
D05chromosomeD05:5555684..5555933 +
A05chromosomeA05:6393910..6394119 +
CM017627.1chromosomeCM017627.1:5394519..5394746 +
CM017614.1chromosomeCM017614.1:6257348..6257600 +
CM017653.1chromosomeCM017653.1:5722314..5722533 +
CM017640.1chromosomeCM017640.1:6270097..6270330 +
CM017705.1chromosomeCM017705.1:5444306..5444543 +
CM017692.1chromosomeCM017692.1:6154445..6154670 +
Chr09chromosomeDPL0022:1..644 .
Chr09:4986805..4987418 +
scaffold450supercontigDPL0022:1..644 .
scaffold450:16731..17344 -
Sequence
>DPL0022 ID=DPL0022|Name=DPL0022|organism=Gossypium hirsutum|type=genetic_marker|length=250bp
GGTGGGTTCTTCTGCAGGTATATTATAATTATTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTTTTCTG
CAAATCTCTTTGTTTTGGGCATGAAAAATTATTGTTAGGTTTTGGGTAGT
GTTTAGAATCATTTGTTTAAAATTCAGATCTCATTCATGATTTACTTCGA
AAAGGAAGAAGGTTAAAATAAAATGCAACTTCTTTCTAGCATTGAAAGGG
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr05N/AAD_chr.05170DPL0022View
2Baimian 1 x TM-1 , F2:3 (2014)BT-F2:3_chr19-1N/AAD_chr.190DPL0022View
3TM-1 x 3-79, RIL (2014)T3-RIL.14_chr05N/AAD_chr.05169.5DPL0022View
4TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr05-1N/AAD_chr.0534.4DPL0022View
5GX1135 x GX100-2, RIL (2015)GG-RIL.15_chr05-1N/AAD_chr.05132.2DPL0022View
6GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr05N/AAD_chr.05132.2DPL0022View
7CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr19N/ADt.05183.8DPL0022View
8CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr05N/AAD_chr.0597.2DPL0022View
9LMY28 x XLZ24, RIL (2018)LX-RIL_chr19N/AAD_chr.1917.22DPL0022View
10(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr19-2N/AAD_chr.196.2MON_DPL0022View
11GX1135 x GX100-2, F2 (2013)GG-F2_chr05-2N/AAD_chr.050DPL022View
12CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr05N/AAt.0538.52DPL0022View
13TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.05N/AAD_chr.05169.51DPL0022View