DC40265, DC40265 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	DC40265
Genbank ID	GQ394706
Type	SSR
Species	Gossypium hirsutum
Germplasm	Deltapine 90
Source Sequence	MONCS1729
Source Type	genomic
Primer 1	DC40265_F: ATTGAAGCACATTAGGGAAA
Primer 2	DC40265_R: CAAGATCAAACATCATGCAA
Publication	[view all]
Contact	Monsanto
Comment	Primer data obtained in 2009-05

Contact

Name

Details

Monsanto

Country:

United States

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	GQ394706

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A02	chromosome	A02:8320625..8320784 -
CM018203.1	chromosome	CM018203.1:7440732..7440870 -
scaffold795.1	supercontig	scaffold795.1:89329..89491 +
A02	chromosome	A02:7654288..7654450 -
Ghir_A02	chromosome	Ghir_A02:7606283..7606434 -
A02	chromosome	A02:7328674..7328836 -
A02	chromosome	A02:7871838..7872000 -
A02	chromosome	A02:7850289..7850451 -
At02	chromosome	At02:8412604..8412742 -
scaffold12004	supercontig	scaffold12004:97664..97802 -
Gbar_A02	chromosome	Gbar_A02:7547172..7547310 -
A02	chromosome	A02:7497760..7497898 -
CM017611.1	chromosome	CM017611.1:7473764..7473905 -
CM017637.1	chromosome	CM017637.1:7851238..7851382 -
CM017689.1	chromosome	CM017689.1:7613078..7613216 -
A02	chromosome	A02:7937738..7937897 -
Chr03	chromosome	Chr03:123943410..123943557 -
Chr03	chromosome	Chr03:194020633..194020980 +

Publications


Year	Publication
2009	Xiao J, Wu K, Fang DD, Stelly DM, Yu J, Cantrell RG. New SSR Markers for Use in Cotton (Gossypium spp.) Improvement. Journal of cotton science. 2009; 13(2):75-157

Germplasm


Stock Name	Type
Deltapine 90	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
MONCS1729	MONCS1729	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Yumian-1 x T586, RIL (2015)	AD_ch02_At.02	N/A	35.8	DC40265	View
2	TM-1 x 3-79, RIL (2014)	AD_ch02_At.02	N/A	79	DC40265	View
3	TM-1 x (TX-0256 + TX-1046), CSIL (2016)	AD_ch02_At.02	N/A	92.3	DC40265	View
4	CCRI-35 x Yumian-1, RIL (2015)	AD_ch02_At.02	N/A	70.4	DC40265	View
5	Monsanto SSR Bin Map, (2009)	AD_ch02_At.02	N/A	61	DC40265	View
6	LMY22 x LY343, RIL (2016)	chr.2	N/A	90.5	DC40265	View
7	LMY22 x LY343, RIL (2020)	A02	N/A	27.03	DC40265	View
8	(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)	AD_ch02_At.02	N/A	4.7	MON_DC40265	View
9	CCRI-35 x Yumian-1, RIL (2017)	AD_ch02_At.02	N/A	39.37	DC40265	View
10	TM-1 x 3-79, RIL (2012.v3)	AD_ch02_At.02	N/A	79.04	DC40265	View
11	MGG-293-793, MAGIC (2018)	AD_ch02_At.02	N/A	73	DC40265	View
12	TM-1 x Hai-7124, BC1 (2012)	AD_ch02_At.02	N/A	52.9	dc40265-150	View

Sequence

>DC40265 ID=DC40265; Name=DC40265; organism=Gossypium hirsutum; type=genetic_marker; length=163bp
ATTGAAGCACATTAGGGAAAATGTGAAATCTAAAGTGTGGATGGATTAAA
TAGAAATTTTTATGTTTATTTTGCTTCTGTTTTTGCATGTTTTTCGATAT
TATTATTATTATTATTATTATTATTATTATTATTATTATTTGTTTGCATG
ATGTTTGATCTTG

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DC40265, DC40265 (genetic_marker) Gossypium hirsutum