DC40250, DC40250 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40250
Genbank IDGQ394697
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1720
Source Typegenomic
Primer 1DC40250_F: TAAGCCCAGAGAGCAATG
Primer 2DC40250_R: CAACTTGTTTTTGGGTGC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394697
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:13458225..13458448 +
A11chromosomeA11:14931004..14931245 +
CM018225.1chromosomeCM018225.1:12539490..12539714 +
CM018212.1chromosomeCM018212.1:14550211..14550447 +
D5_11chromosomeD5_11:53504765..53504988 -
KI_11chromosomeKI_11:9632999..9633208 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:109098198..109098442 -
D10_11chromosomeD10_11:12253521..12253726 +
CM016624.1chromosomeCM016624.1:19204172..19204394 +
D11chromosomeD11:13035588..13035811 +
A11chromosomeA11:14650748..14650989 +
Ghir_D11chromosomeGhir_D11:13001405..13001628 +
Ghir_A11chromosomeGhir_A11:15040489..15040730 +
D11chromosomeD11:12714992..12715215 +
A11chromosomeA11:14559215..14559456 +
D11chromosomeD11:13054554..13054777 +
A11chromosomeA11:14753447..14753699 +
D11chromosomeD11:12823163..12823386 +
A11chromosomeA11:15127675..15127913 +
Dt11chromosomeDt11:14360066..14360290 +
scaffold2820supercontigscaffold2820:565550..565786 +
scaffold1853supercontigscaffold1853:9580..9804 +
Gbar_D11chromosomeGbar_D11:12826101..12826325 +
Gbar_A11chromosomeGbar_A11:14295946..14296179 +
D11chromosomeD11:12727848..12728072 +
A11chromosomeA11:14561774..14562010 +
CM017633.1chromosomeCM017633.1:12701444..12701667 +
CM017620.1chromosomeCM017620.1:14867553..14867793 +
CM017659.1chromosomeCM017659.1:12986241..12986463 +
CM017646.1chromosomeCM017646.1:14941838..14942076 +
CM017711.1chromosomeCM017711.1:12808921..12809144 +
CM017698.1chromosomeCM017698.1:14803447..14803680 +
D11chromosomeD11:13264696..13264919 +
A11chromosomeA11:15275304..15275545 +
Chr11chromosomeChr11:15600960..15601209 +
Chr11chromosomeChr11:15208812..15209054 +
Chr11chromosomeChr11:50998637..50998859 -
B_11chromosomeB_11:14034107..14034330 +
Chr07chromosomeChr07:12497409..12497623 +
chr07_6502455chromosomechr07_6502455:3560..3764 +
Chr_07chromosomeChr_07:11005123..11005366 +
Chr07chromosomeChr07:10208765..10209322 +
E11chromosomeE11:15638343..15638553 +
F11chromosomeF11:12652193..12652406 +
Chr11chromosomeChr11:164625390..164625596 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1720MONCS1720Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A49.4DC40250bView
2Monsanto SSR Bin Map, (2009)AD_ch11_At.11N/A61DC40250bView
3TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A66.4DC40250aView
4Monsanto SSR Bin Map, (2009)AD_ch21_Dt.11N/A61DC40250aView
5W10 x TM-1, F2:3 (2015)AD_ch11_At.11N/A68.9DC40250View
6GX1135 x GX100-2, RIL (2016)AD_ch11_At.11N/A148.2DC40250View
7TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A49.42DC40250bView
8TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A66.42DC40250aView
Sequence
>DC40250 ID=DC40250; Name=DC40250; organism=Gossypium hirsutum; type=genetic_marker; length=244bp
TAAGCCCAGAGAGCAATGTCAAGTATTAAAAAAAAAAAACCAACTTATAT
CTATGTTTGTCTATAATTTAATGTGGAATTTGCATTGTTGTAATCAAACA
TGATGATCAAGGTCAAATACACTTCTACAATCCAAAGCCTGTCTTATTAT
TATTATTATTATTATTATTATTATTATTATTAATAATAATAACTCTCATA
ACTAAACAAAGGGTCCATTAAAGATTGCACCCAAAAACAAGTTG