DC40127, DC40127 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40127
Genbank IDGQ394628
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1651
Source Typegenomic
Primer 1DC40127_F: GCGCATGAAGTATATCCAA
Primer 2DC40127_R: TACACAAGGGATTGACGG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394628
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:32468153..32468498 +
A08chromosomeA08:63180556..63180787 +
CM018209.1chromosomeCM018209.1:57059918..57060261 +
CM018222.1chromosomeCM018222.1:34615768..34615971 -
D5_08chromosomeD5_08:28108630..28108951 +
D10_08chromosomeD10_08:36226747..36227090 +
Dt_chr4chromosomeDt_chr4:34968447..34968664 -
D08chromosomeD08:30179736..30180081 +
A08chromosomeA08:50428812..50429151 +
Ghir_D08chromosomeGhir_D08:35624298..35624521 -
Ghir_A08chromosomeGhir_A08:72377219..72377436 -
D08chromosomeD08:34134938..34135283 +
A08chromosomeA08:75920050..75920281 -
D08chromosomeD08:33133084..33133425 +
A08chromosomeA08:75325858..75326089 -
D08chromosomeD08:30856378..30856717 +
A08chromosomeA08:59759480..59759821 +
Dt08chromosomeDt08:30439307..30439632 +
Dt08chromosomeDt08:30435827..30436147 +
scaffold1408supercontigscaffold1408:259556..259881 +
scaffold1408supercontigscaffold1408:256076..256396 +
scaffold19127supercontigscaffold19127:56654..56873 -
Gbar_D08chromosomeGbar_D08:31487005..31487330 +
Gbar_A08chromosomeGbar_A08:58281419..58281758 +
D08chromosomeD08:33018758..33019083 +
CM017630.1chromosomeCM017630.1:32888289..32888519 -
CM017656.1chromosomeCM017656.1:36686174..36686409 -
CM017708.1chromosomeCM017708.1:34709037..34709240 -
A08chromosomeA08:62921778..62922009 +
D08chromosomeD08:36706997..36707220 -
Chr08chromosomeChr08:28719107..28719430 +
B_08chromosomeB_08:50161805..50162009 -
Chr04chromosomeChr04:30096189..30096520 +
chr04chromosomechr04:22149928..22150268 +
Chr_04chromosomeChr_04:19945928..19946275 +
Chr04chromosomeChr04:31893465..31893797 +
Chr04chromosomeChr04:19392767..19393100 +
F08chromosomeF08:51588031..51588362 +
Chr08chromosomeChr08:76556859..76557177 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1651MONCS1651Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A67.5DC40127bView
2Monsanto SSR Bin Map, (2009)AD_ch08_At.08N/A101DC40127bView
3TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A28.8DC40127aView
4Monsanto SSR Bin Map, (2009)AD_ch24_Dt.08N/A81DC40127aView
5Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A48DC40127View
6TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch24_Dt.08N/A73.9DC40127View
7W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A26.6DC40127View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A57.2DC40127View
9TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A67.49DC40127bView
10TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A28.79DC40127aView
11TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A80dc40127-210View
Sequence
>DC40127 ID=DC40127; Name=DC40127; organism=Gossypium hirsutum; type=genetic_marker; length=223bp
GCGCATGAAGTATATCCAAAAACATAAGTTAACATCTCCAAACATATTTA
TTTGCAGATATAAGAGTAATTATTCTTTCCAACAATTAAAAGAAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGATTTTACGAAAATTTC
TAAACCCAAAATAAAAAAAAAGCAAGGACCTGTGACGACGGCGGTTAGAC
CAGTGCCGTCAATCCCTTGTGTA