DC40122, DC40122 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40122
Genbank IDGQ394623
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1646
Source Typegenomic
Primer 1DC40122_F: GAAACACCCAAAACGTCA
Primer 2DC40122_R: GGTTTTCCCTCAGATTGG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394623
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:14433790..14434078 +
A05chromosomeA05:15395612..15395916 +
CM018219.1chromosomeCM018219.1:13517905..13518193 +
CM018206.1chromosomeCM018206.1:15063986..15064294 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:96163971..96164257 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:15115605..15115917 +
D10_05chromosomeD10_05:47593785..47594069 -
CM016626.1chromosomeCM016626.1:22272101..22272411 +
scaffold3586.1supercontigscaffold3586.1:74060..74364 -
D05chromosomeD05:13550691..13550979 +
A05chromosomeA05:13667807..13668111 +
Ghir_D05chromosomeGhir_D05:14066632..14066920 +
Ghir_A11chromosomeGhir_A11:23101366..23101655 +
Ghir_A10chromosomeGhir_A10:105587924..105588211 +
Ghir_A07chromosomeGhir_A07:45803611..45803896 +
Ghir_A05chromosomeGhir_A05:15371966..15372270 +
Ghir_A12chromosomeGhir_A12:10815544..10815829 -
D05chromosomeD05:13722222..13722510 +
A05chromosomeA05:14872601..14872905 +
D05chromosomeD05:13904471..13904759 +
A05chromosomeA05:15387547..15387851 +
D05chromosomeD05:13787249..13787537 +
A05chromosomeA05:15548615..15548919 +
At07chromosomeAt07:49306684..49306969 +
scaffold6550supercontigscaffold6550:26177..26462 +
scaffold52482supercontigscaffold52482:55..343 +
scaffold16942supercontigscaffold16942:9356..9641 +
scaffold3380supercontigscaffold3380:337362..337649 -
Gbar_D05chromosomeGbar_D05:13961031..13961319 +
Gbar_A11chromosomeGbar_A11:22010195..22010482 +
Gbar_A10chromosomeGbar_A10:100489459..100489746 +
Gbar_A07chromosomeGbar_A07:43811981..43812266 +
Gbar_A05chromosomeGbar_A05:14658263..14658569 +
Gbar_A12chromosomeGbar_A12:10796917..10797202 -
D05chromosomeD05:13936106..13936394 +
A05chromosomeA05:15302869..15303173 +
CM017627.1chromosomeCM017627.1:13852031..13852319 +
CM017614.1chromosomeCM017614.1:15095433..15095747 +
CM017653.1chromosomeCM017653.1:14280030..14280320 +
CM017705.1chromosomeCM017705.1:13976757..13977047 +
CM017692.1chromosomeCM017692.1:14894456..14894784 +
D05chromosomeD05:14274078..14274366 +
A05chromosomeA05:15620839..15621143 +
Chr05chromosomeChr05:16152501..16152821 +
Chr12chromosomeChr12:11205539..11205825 -
Chr05chromosomeChr05:14968147..14968459 +
Chr12chromosomeChr12:11056633..11056919 -
Chr05chromosomeChr05:12846472..12846762 +
B_08chromosomeB_08:104470058..104470351 +
B_02chromosomeB_02:71331195..71331481 +
B_01chromosomeB_01:88856446..88856735 +
B_13chromosomeB_13:89026041..89026324 -
B_05chromosomeB_05:71161347..71161641 -
Chr09chromosomeChr09:13347910..13348196 +
chr09chromosomechr09:11991216..11991502 +
Chr_09chromosomeChr_09:11466071..11466355 +
Chr09chromosomeChr09:13774954..13775252 +
Chr09chromosomeChr09:11607809..11608097 +
Chr09chromosomeChr09:9969316..9969614 +
Chr09chromosomeChr09:11523432..11523718 +
E05chromosomeE05:16494743..16495031 +
F11chromosomeF11:73424755..73425080 +
F05chromosomeF05:13060571..13060880 +
Chr13chromosomeChr13:179432289..179432593 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1646MONCS1646Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Baimian 1 x TM-1 , F2:3 (2014)AD_ch19_Dt.05N/A36.8DC40122View
2TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A140.4DC40122View
3GX1135 x GX100-2, F2 (2013)AD_ch19_Dt.05N/A45.7DC40122View
4GX1135 x GX100-2, RIL (2015)AD_ch19_Dt.05N/A9.7DC40122View
5GX1135 x GX100-2, RIL (2016)AD_ch19_Dt.05N/A9.7DC40122View
6LMY28 x XLZ24, RIL (2018)AD_ch05_At.05N/A19.2DC40122View
7Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A141DC40122View
8TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A140.38DC40122View
Sequence
>DC40122 ID=DC40122; Name=DC40122; organism=Gossypium hirsutum; type=genetic_marker; length=326bp
GAAACACCCAAAACGTCATCTAAGTGAAAATCCTAAACAAAGAAGATCAA
GCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTC
TCTCTCTCTAAAAGGGTTCAAAAAATAAATGAAGACCCAACTTAGAGATT
CTTGAATCTCTTCTTTGACGATGTAGAATGGATCTTGAGCTTTAGACATC
TTAGAAGTAACTTATATCACGTAAACATGCAAGGAACAATTCTTTAGCAA
TAATTCAGATTAAACAAAAAGAAGCGTAAAGTTGTAACATGGTTTCTCAA
CTCTGCCGCCAATCTGAGGGAAAACC