DC40122, DC40122 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40122
Genbank IDGQ394623
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1646
Source Typegenomic
Primer 1DC40122_F: GAAACACCCAAAACGTCA
Primer 2DC40122_R: GGTTTTCCCTCAGATTGG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394623
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
DC40122_FDC40122_FGossypium hirsutumprimer
DC40122_RDC40122_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber immature contentqFIM.T3-RIL_ch5.csGossypium spp.QTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
DC40122DC40122Gossypium hirsutummarker_locus
DC40122DC40122-140.379Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1646MONCS1646Gossypium hirsutumsequence_feature


Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:14433790..14434078 +
A05chromosomeA05:15395612..15395916 +
CM018219.1chromosomeCM018219.1:13517905..13518193 +
CM018206.1chromosomeCM018206.1:15063986..15064294 +
Chr6chromosomeChr6:94166254..94166540 +
Chr10chromosomeChr10:19136781..19137093 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:96163971..96164257 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:15115605..15115917 +
Chr9chromosomeChr9:20279446..20279736 +
D10_05chromosomeD10_05:47593785..47594069 -
CM016626.1chromosomeCM016626.1:22272101..22272411 +
scaffold3586.1supercontigscaffold3586.1:74060..74364 -
D05chromosomeD05:13550691..13550979 +
A05chromosomeA05:13667807..13668111 +
Ghir_D05chromosomeGhir_D05:14066632..14066920 +
Ghir_A11chromosomeGhir_A11:23101366..23101655 +
Ghir_A10chromosomeGhir_A10:105587924..105588211 +
Ghir_A07chromosomeGhir_A07:45803611..45803896 +
Ghir_A05chromosomeGhir_A05:15371966..15372270 +
Ghir_A12chromosomeGhir_A12:10815544..10815829 -
D05chromosomeD05:13722222..13722510 +
A05chromosomeA05:14872601..14872905 +
D05chromosomeD05:13904471..13904759 +
A05chromosomeA05:15387547..15387851 +
D05chromosomeD05:13787249..13787537 +
A05chromosomeA05:15548615..15548919 +
At07chromosomeAt07:49306684..49306969 +
scaffold6550supercontigscaffold6550:26177..26462 +
scaffold52482supercontigscaffold52482:55..343 +
scaffold16942supercontigscaffold16942:9356..9641 +
scaffold3380supercontigscaffold3380:337362..337649 -
Gbar_D05chromosomeGbar_D05:13961031..13961319 +
Gbar_A11chromosomeGbar_A11:22010195..22010482 +
Gbar_A10chromosomeGbar_A10:100489459..100489746 +
Gbar_A07chromosomeGbar_A07:43811981..43812266 +
Gbar_A05chromosomeGbar_A05:14658263..14658569 +
Gbar_A12chromosomeGbar_A12:10796917..10797202 -
D05chromosomeD05:13936106..13936394 +
A05chromosomeA05:15302869..15303173 +
CM017627.1chromosomeCM017627.1:13852031..13852319 +
CM017614.1chromosomeCM017614.1:15095433..15095747 +
CM017653.1chromosomeCM017653.1:14280030..14280320 +
CM017705.1chromosomeCM017705.1:13976757..13977047 +
CM017692.1chromosomeCM017692.1:14894456..14894784 +
Sequence
>DC40122 ID=DC40122|Name=DC40122|organism=Gossypium hirsutum|type=genetic_marker|length=326bp
GAAACACCCAAAACGTCATCTAAGTGAAAATCCTAAACAAAGAAGATCAA
GCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTC
TCTCTCTCTAAAAGGGTTCAAAAAATAAATGAAGACCCAACTTAGAGATT
CTTGAATCTCTTCTTTGACGATGTAGAATGGATCTTGAGCTTTAGACATC
TTAGAAGTAACTTATATCACGTAAACATGCAAGGAACAATTCTTTAGCAA
TAATTCAGATTAAACAAAAAGAAGCGTAAAGTTGTAACATGGTTTCTCAA
CTCTGCCGCCAATCTGAGGGAAAACC
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr05N/AAD_chr.05150DC40122View
2Baimian 1 x TM-1 , F2:3 (2014)BT-F2:3_chr19-2N/AAD_chr.1936.8DC40122View
3TM-1 x 3-79, RIL (2014)T3-RIL.14_chr05N/AAD_chr.05140.4DC40122View
4GX1135 x GX100-2, F2 (2013)GG-F2_chr19-2N/AAD_chr.1945.7DC40122View
5GX1135 x GX100-2, RIL (2015)GG-RIL.15_chr19N/AAD_chr.199.7DC40122View
6GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr19N/AAD_chr.199.7DC40122View
7LMY28 x XLZ24, RIL (2018)LX-RIL_chr05N/AAD_chr.0519.2DC40122View
8TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.05N/AAD_chr.05140.38DC40122View