DC40111, DC40111 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40111
Genbank IDGQ394614
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1637
Source Typegenomic
Primer 1DC40111_F: AAAATTGTTGCACGCTGT
Primer 2DC40111_R: GAAGCGGAACATAGCAGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394614
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:5931542..5931874 -
A05chromosomeA05:6413053..6413385 -
CM018219.1chromosomeCM018219.1:5421506..5421838 -
CM018206.1chromosomeCM018206.1:6320663..6320995 -
D5_05chromosomeD5_05:5177074..5177406 -
KI_05chromosomeKI_05:4773259..4773591 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:6364786..6365118 -
D10_05chromosomeD10_05:55291650..55291982 +
CM016626.1chromosomeCM016626.1:9192070..9192402 -
At_chr9chromosomeAt_chr9:55087811..55088143 +
Dt_chr9chromosomeDt_chr9:63630607..63630939 -
D05chromosomeD05:5628388..5628720 -
A05chromosomeA05:6029967..6030299 -
Ghir_D05chromosomeGhir_D05:5763847..5764179 -
Ghir_A05chromosomeGhir_A05:6449250..6449582 -
D05chromosomeD05:5567884..5568216 -
A05chromosomeA05:6254119..6254451 -
D05chromosomeD05:5697884..5698210 -
A05chromosomeA05:6439690..6440022 -
D05chromosomeD05:5572381..5572713 -
A05chromosomeA05:6825306..6825638 -
Dt05chromosomeDt05:5860736..5861068 -
scaffold30354supercontigscaffold30354:14663..14995 +
scaffold27350supercontigscaffold27350:50099..50431 -
Gbar_D05chromosomeGbar_D05:5639273..5639605 -
Gbar_A05chromosomeGbar_A05:6007080..6007412 -
D05chromosomeD05:5731225..5731557 -
A05chromosomeA05:6582013..6582345 -
CM017627.1chromosomeCM017627.1:5575019..5575351 -
CM017614.1chromosomeCM017614.1:6423129..6423461 -
CM017653.1chromosomeCM017653.1:5892500..5892832 -
CM017640.1chromosomeCM017640.1:6452095..6452427 -
CM017705.1chromosomeCM017705.1:5627483..5627815 -
CM017692.1chromosomeCM017692.1:6335850..6336182 -
D05chromosomeD05:5716959..5717291 -
A05chromosomeA05:6594605..6594937 -
Chr05chromosomeChr05:6794419..6794751 -
Chr05chromosomeChr05:6242978..6243310 -
Chr05chromosomeChr05:5212277..5212609 -
B_05chromosomeB_05:79853228..79853560 +
Chr09chromosomeChr09:5356778..5357110 -
chr09chromosomechr09:5030169..5030501 -
Chr09chromosomeChr09:5536455..5536787 -
Chr09chromosomeChr09:5064644..5064976 -
Chr09chromosomeChr09:4951152..4951484 -
E05chromosomeE05:6886752..6887084 -
F05chromosomeF05:5415353..5415685 -
Chr13chromosomeChr13:191627839..191628171 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1637MONCS1637Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A19.1DC40111View
2GX1135 x GX100-2, F2 (2013)AD_ch05_At.05N/A6.2DC40111View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch19_Dt.05N/A4.2MON_DC40111View
Sequence
>DC40111 ID=DC40111; Name=DC40111; organism=Gossypium hirsutum; type=genetic_marker; length=333bp
AAAATTGTTGCACGCTGTGCAGTATTCTTTCTCATAGATAGTATTTGAGT
ATTGAGGAACTCATTTCTTCATATCCCCATCCGCAATGCATCGCAACGAT
GGCGTTTGTTTCACCTCCTCTTCTTTCAAAGTCCCTCTCTCTCCTCCCTC
CCAAACCCTAGCCTCTCCCCTCTCCAGAGCTCGTCACTCCCTTTTCCAAC
TTCTTCACTCCCTCAGGAATCGCTCCCTCCCTCCTACCACATCCACTCAC
TCTCCCCTACTATGCTGTTCGTCTCTCTCTCTAACCGCCCAGACCTACAA
CCTTGTTAATGCGCCTCTGCTATGTTCCGCTTC