DC20052, DC20052 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC20052
Genbank IDGQ394459
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1482
Source Typegenomic
Primer 1DC20052_F: CTTATATCAAGACGGTCTCAA
Primer 2DC20052_R: GAAGAAGAAGACGGAGATAGG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:5669023..5669208 +
A02chromosomeA02:80396649..80396818 +
CM018217.1chromosomeCM018217.1:5318170..5318343 +
CM018203.1chromosomeCM018203.1:90733398..90733557 +
D5_02chromosomeD5_02:4491757..4491929 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:5743204..5743373 -
D10_02chromosomeD10_02:5411690..5411859 +
CM016615.1chromosomeCM016615.1:8615658..8615823 +
Dt_chr3chromosomeDt_chr3:23980426..23980613 -
At_chr3chromosomeAt_chr3:44308451..44308620 -
At_chr3chromosomeAt_chr3:44307648..44307817 -
D03chromosomeD03:5286376..5286563 +
A02chromosomeA02:74019745..74019914 +
Ghir_D03chromosomeGhir_D03:5450786..5450971 +
Ghir_A02chromosomeGhir_A02:98290145..98290314 +
D03chromosomeD03:5331924..5332111 +
A02chromosomeA02:98782519..98782688 +
D03chromosomeD03:5484037..5484222 +
A02chromosomeA02:96226720..96226889 +
D03chromosomeD03:5316902..5317087 +
A02chromosomeA02:94568183..94568352 +
At02chromosomeAt02:78735990..78736149 +
scaffold13464supercontigscaffold13464:134849..135008 +
scaffold3845supercontigscaffold3845:31895..32068 -
scaffold3845supercontigscaffold3845:24217..24390 -
Gbar_D03chromosomeGbar_D03:5359066..5359239 +
Gbar_A02chromosomeGbar_A02:90827992..90828151 +
D03chromosomeD03:5493219..5493393 +
A02chromosomeA02:92920091..92920250 +
CM017625.1chromosomeCM017625.1:5345906..5346082 +
CM017611.1chromosomeCM017611.1:94680779..94680938 +
CM017651.1chromosomeCM017651.1:5558204..5558380 +
CM017637.1chromosomeCM017637.1:99952739..99952906 +
CM017703.1chromosomeCM017703.1:5477637..5477811 +
CM017689.1chromosomeCM017689.1:92677887..92678046 +
D03chromosomeD03:5589044..5589229 +
A02chromosomeA02:98393052..98393221 +
Chr02chromosomeChr02:86158837..86158998 -
Chr02chromosomeChr02:95806145..95806314 -
Chr02chromosomeChr02:5132861..5133033 +
B_04chromosomeB_04:67590208..67590378 -
Chr03chromosomeChr03:5252843..5253017 +
chr03chromosomechr03:4559618..4559784 +
Chr_03chromosomeChr_03:3641226..3641461 +
Chr03chromosomeChr03:5536902..5537070 +
Chr03chromosomeChr03:3822919..3823189 +
Chr03chromosomeChr03:3346211..3346379 +
Chr03chromosomeChr03:4416941..4417107 +
F02chromosomeF02:5410124..5410288 +
Chr02chromosomeChr02:129311577..129311745 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1482MONCS1482Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A73.8DC20052View
2Yumian-1 x 7235, RIL (2015)AD_ch02_At.02N/A67.2DC20052View
3TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A45.2DC20052View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A102DC20052View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch17_Dt.03N/A85.2DC20052View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A46.2DC20052View
7Monsanto SSR Bin Map, (2009)AD_ch17_Dt.03N/A81DC20052View
8(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A21.8MON_DC20052View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A66.48DC20052View
10TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A45.24DC20052View
Sequence
>DC20052 ID=DC20052; Name=DC20052; organism=Gossypium hirsutum; type=genetic_marker; length=188bp
CTTATATCAAGACGGTCTCAACGCCCCCCTTTGAAACCAAAACACACACA
CACACACACACACACACACACACACACACACACACAAAGAAACAGCTTTC
TTTTTGCAGATAGAAAGGGAAGAAATTACCCAAAAAACAAAATTTATGGC
TACACTCTCTTATTCCTCCTATCTCCGTCTTCTTCTTC