DC20036, DC20036 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC20036
Genbank IDGQ394454
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1477
Source Typegenomic
Primer 1DC20036_F: CATCAAGGCTATTTAACATTC
Primer 2DC20036_R: TTTTGCCTCTGGTATGACAC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:57929637..57929807 +
A07chromosomeA07:93600705..93600870 +
CM018221.1chromosomeCM018221.1:55860032..55860232 +
CM018208.1chromosomeCM018208.1:93577522..93577677 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:97324290..97324445 +
D10_07chromosomeD10_07:171119..171616 -
scaffold1142.1supercontigscaffold1142.1:96475..96640 +
scaffold1383.1supercontigscaffold1383.1:175264..175434 -
D07chromosomeD07:55132792..55132962 +
Ghir_D07chromosomeGhir_D07:59034733..59034903 +
D07chromosomeD07:58250852..58251022 +
A07chromosomeA07:96413394..96413559 +
D07chromosomeD07:58656937..58657107 +
A07chromosomeA07:96542222..96542387 +
D07chromosomeD07:54939459..54939629 +
A07chromosomeA07:93062825..93062990 +
Dt07chromosomeDt07:61082004..61082180 +
At07chromosomeAt07:87149354..87149507 +
scaffold6943supercontigscaffold6943:72872..73025 +
Gbar_D07chromosomeGbar_D07:56249951..56250149 +
Gbar_A07chromosomeGbar_A07:92569800..92569955 +
D07chromosomeD07:56882167..56882335 +
A07chromosomeA07:94852675..94852830 +
CM017616.1chromosomeCM017616.1:96576327..96576484 +
CM017707.1chromosomeCM017707.1:56928595..56928813 +
CM017694.1chromosomeCM017694.1:94932043..94932196 +
D07chromosomeD07:59263696..59263866 +
A07chromosomeA07:98719549..98719712 +
Chr07chromosomeChr07:100474369..100474526 +
Chr07chromosomeChr07:101880960..101881115 +
Chr01chromosomeChr01:42196562..42197063 +
Chr01chromosomeChr01:40818451..40818952 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1477MONCS1477Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch07_At.07N/A0DC20036View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A145.3DC20036View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch07_At.07N/A7.4DC20036View
4TM-1 x 3-79, RIL (2012.v3)AD_ch07_At.07N/A0DC20036View
5Monsanto SSR Bin Map, (2009)AD_ch07_At.07N/A0DC20036View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch07_At.07N/A15.3MON_DC20036View
7DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A78.68MON_DC20036View
8DH962 x Ji Mian 5, RIL (2015)AD_ch07_At.07N/A0MON_DC20036View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch07_At.07N/A112.68DC20036View
10TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A4.6dc20036-160View
Sequence
>DC20036 ID=DC20036; Name=DC20036; organism=Gossypium hirsutum; type=genetic_marker; length=168bp
CATCAAGGCTATTTAACATTCATCACCTTCTTACCCCGTAAATTTCCTCC
TTTTTTTCGAACACACACACACACACACACACACACACACACATACATAC
ATGTTCCCCTGCAATGCCGGGTTTTCACCAATCACGATTTGCACCAGAGT
GTCATACCAGAGGCAAAA