COT119, COT119 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCOT119
Genbank IDGQ393158
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 20
Source SequenceMONCS1432
Source Typegenomic
Primer 1COT119_F: ACAAATTGCCAAAAGTAT
Primer 2COT119_R: TAAGCCATAAATATTGAAAGT
PolymorphismP_ COT119
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:64062803..64063034 -
CM018211.1chromosomeCM018211.1:106229256..106229445 -
D5_10chromosomeD5_10:3569562..3569750 +
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4276513..4276702 +
D10_10chromosomeD10_10:3568066..3568288 +
CM016623.1chromosomeCM016623.1:139939856..139940084 -
CM016623.1chromosomeCM016623.1:139907564..139907773 -
scaffold1048.1supercontigscaffold1048.1:90505..90694 -
scaffold13498supercontigscaffold13498:12..243 -
Ghir_D10chromosomeGhir_D10:63853406..63853635 -
D10chromosomeD10:63212267..63212498 -
D10chromosomeD10:62370232..62370421 -
D10chromosomeD10:60310596..60310827 -
scaffold19448supercontigscaffold19448:24378..24541 +
scaffold25637supercontigscaffold25637:33567..33730 -
scaffold16242supercontigscaffold16242:129721..129910 -
Gbar_D10chromosomeGbar_D10:61327606..61327769 -
Gbar_A10chromosomeGbar_A10:106506707..106506896 -
A10chromosomeA10:107891866..107892055 -
CM017632.1chromosomeCM017632.1:61309352..61309541 -
CM017619.1chromosomeCM017619.1:107181123..107181312 -
CM017658.1chromosomeCM017658.1:64007108..64007297 -
CM017645.1chromosomeCM017645.1:114871278..114871467 -
CM017697.1chromosomeCM017697.1:109465519..109465704 -
D10chromosomeD10:64024057..64024288 -
Chr10chromosomeChr10:119983255..119983444 -
Chr10chromosomeChr10:58582985..58583174 -
Chr11_2705250chromosomeChr11_2705250:3706..3910 +
Chr11chromosomeChr11:62192550..62192741 -
Chr11chromosomeChr11:45957739..45957928 -
Chr11chromosomeChr11:33755269..33755458 -
Chr11chromosomeChr11:44700319..44700667 -
E10chromosomeE10:5210254..5210446 +
F10chromosomeF10:91324539..91324728 -
Chr11chromosomeCOT119:1..491 .
Chr11:59110650..59111098 -
Chr11chromosomeCOT119:1..491 .
Chr11:43378777..43379225 -
Germplasm
Stock NameType
Deltapine 20accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1432MONCS1432Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch10_At.10N/A19.1COT119bView
2Monsanto SSR Bin Map, (2009)AD_ch10_At.10N/A21COT119bView
3TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A16.4COT119aView
4Monsanto SSR Bin Map, (2009)AD_ch20_Dt.10N/A21COT119aView
5Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A151.2COT119View
6Yumian-1 x 7235, RIL (2015)AD_ch20_Dt.10N/A121.1COT119View
7W10 x TM-1, F2:3 (2015)AD_ch20_Dt.10N/A63.6COT119View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A38.9COT119View
9(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch20_Dt.10N/A99.5MON_COT119View
10DH962 X Ji Mian 5, F2 (2015)AD_ch20_Dt.10N/A96.32MON_COT119View
11DH962 x Ji Mian 5, RIL (2015)AD_ch20_Dt.10N/A22.8MON_COT119View
12CCRI-35 x Yumian-1, RIL (2017)AD_ch20_Dt.10N/A113.15COT119View
13TM-1 x 3-79, RIL (2012.v3)AD_ch10_At.10N/A19.14COT119bView
14TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A16.45COT119aView
15TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A26cot119-200View
16TM-1 x Hai-7124, BC1 (2012)AD_ch20_Dt.10N/A15.4cot119-170View
Sequence
>COT119 ID=COT119; Name=COT119; organism=Gossypium hirsutum; type=genetic_marker; length=232bp
ACAAATTGCCAAAAGTATTTGGATACTTTATATTGTCAAACATTTAGGAT
TAAATTGAATTCAATAGGGTTCAGACATAACAATAATAATAATAATAATA
ATAATAATGATAATGATAATAATAATAATAATAATAAACTCATTTAAGTA
ATAATAATTCTCATATCATATATAATTGGTCCCATGCCCCTGAAAATCAT
AACAATGCAAAACTTTCAATATTTATGGCTTA