COT059, COT059 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCOT059
Genbank IDGQ393136
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 20
Source SequenceMONCS1410
Source Typegenomic
Primer 1COT059_F: CACCCTTGACAGTTACCACAG
Primer 2COT059_R: TTTTCGCTTTTGCCTTTG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:56985736..56985960 -
A01chromosomeA01:94805994..94806205 -
CM018215.1chromosomeCM018215.1:55703109..55703323 -
CM018202.1chromosomeCM018202.1:104038180..104038391 -
D5_01chromosomeD5_01:50070436..50070646 -
KI_01chromosomeKI_01:33481019..33481231 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:89771667..89771880 -
D10_01chromosomeD10_01:6884957..6885184 +
CM016614.1chromosomeCM016614.1:125827829..125828036 -
scaffold39.1supercontigscaffold39.1:1751463..1751674 +
Dt_chr2chromosomeDt_chr2:10797910..10798124 +
scaffold128656supercontigscaffold128656:87..298 +
D01chromosomeD01:54259898..54260122 -
A01chromosomeA01:90791181..90791392 -
Ghir_D01chromosomeGhir_D01:55938627..55938850 -
Ghir_A01chromosomeGhir_A01:108368829..108369040 -
D01chromosomeD01:57634526..57634750 -
A01chromosomeA01:109098469..109098680 -
D01chromosomeD01:57348849..57349063 -
A01chromosomeA01:106697426..106697637 -
D01chromosomeD01:54588217..54588441 -
A01chromosomeA01:103478987..103479198 -
scaffold2675supercontigscaffold2675:628633..628847 +
scaffold2675supercontigscaffold2675:631480..631691 +
scaffold1117supercontigscaffold1117:69853..70067 +
Gbar_D01chromosomeGbar_D01:55928769..55928983 -
Gbar_A01chromosomeGbar_A01:106464329..106464540 -
D01chromosomeD01:56623377..56623591 -
A01chromosomeA01:106468899..106469110 -
CM017623.1chromosomeCM017623.1:56739945..56740163 -
CM017610.1chromosomeCM017610.1:105060680..105060891 -
CM017649.1chromosomeCM017649.1:58200423..58200635 -
CM017636.1chromosomeCM017636.1:112338836..112339047 -
CM017701.1chromosomeCM017701.1:56246373..56246593 -
CM017688.1chromosomeCM017688.1:102606501..102606712 -
D01chromosomeD01:57832093..57832317 -
A01chromosomeA01:110173430..110173641 -
Chr01chromosomeChr01:113476499..113476710 -
Chr02chromosomeChr02:9594469..9594682 +
Chr01chromosomeChr01:45459741..45459951 -
B_01chromosomeB_01:89366114..89366323 -
Chr02chromosomeChr02:54181834..54182057 -
chr02chromosomechr02:41323393..41323901 -
Chr02chromosomeChr02:55038647..55038868 -
Chr02chromosomeChr02:39919119..39919342 -
Chr02chromosomeChr02:31515457..31515670 -
Chr02chromosomeChr02:38309084..38309307 -
E01chromosomeE01:106827753..106827962 -
F01chromosomeF01:90798321..90798530 -
Chr01chromosomeChr01:16315940..16316149 +
Germplasm
Stock NameType
Deltapine 20accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1410MONCS1410Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A92.4COT059View
2Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A87.9COT059View
3TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A43COT059View
4W10 x TM-1, F2:3 (2015)AD_ch15_Dt.01N/A51.9COT059View
5GX1135 x GX100-2, F2 (2013)AD_ch01_At.01N/A75.3COT059View
6GX1135 x GX100-2, RIL (2015)AD_ch15_Dt.01N/A4.7COT059View
7GX1135 x GX100-2, RIL (2016)AD_ch15_Dt.01N/A4.7COT059View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A63.2COT059View
9Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A41COT059View
10DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A33.46MON_COT059View
11DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A33.46MON_COT059View
12DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A9.9MON_COT059View
13TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A42.96COT059View
14TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A58cot059-200View
Sequence
>COT059 ID=COT059; Name=COT059; organism=Gossypium hirsutum; type=genetic_marker; length=223bp
CACCCTTGACAGTTACCACAGCGCCATCTGCTAACATTACCTTTTTCAAG
ACACCAGCATCCACATCATGCTGCATGATTTAACCATCAACAAGATCAAT
CAATTGACTTGAAAAGATTACACACACACACACACACACACACACACACA
CACATCCTATAGTCATACCTAAATGGGAAACGGTCCCAAAAAGAGAATCT
AAATTCAAAGGCAAAAGCGAAAA