COT009, COT009 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	COT009
Genbank ID	GQ393116
Type	SSR
Species	Gossypium hirsutum
Germplasm	Deltapine 20
Source Sequence	MONCS1390
Source Type	genomic
Primer 1	COT009_F: CAACCGTTTGAACACTTGTAA
Primer 2	COT009_R: GTGATGGCATATTTTGGTCTA
Publication	[view all]
Contact	Monsanto
Comment	Primer data obtained in 2009-05

Contact

Name

Details

Monsanto

Country:

United States

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	GQ393116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A13	chromosome	A13:83821312..83821473 -
CM018214.1	chromosome	CM018214.1:88253081..88253230 -
Chr13_CRI-A2_v1.0.a1	chromosome	Chr13_CRI-A2_v1.0.a1:101767850..101768034 -
At_chr13	chromosome	At_chr13:27546678..27546874 -
A13	chromosome	A13:60461148..60461309 -
Ghir_A11	chromosome	Ghir_A11:56857957..56858086 +
Ghir_A13	chromosome	Ghir_A13:87562247..87562450 -
Ghir_A07	chromosome	Ghir_A07:64746020..64746153 -
A13	chromosome	A13:90573952..90574113 -
A13	chromosome	A13:88611856..88612058 -
A13	chromosome	A13:87292597..87292807 -
scaffold48374	supercontig	scaffold48374:11769..11918 +
scaffold2104	supercontig	scaffold2104:39996..40129 +
scaffold2261	supercontig	scaffold2261:192549..192678 -
Gbar_A11	chromosome	Gbar_A11:52086777..52086906 +
Gbar_A13	chromosome	Gbar_A13:89507837..89507986 -
Gbar_A07	chromosome	Gbar_A07:61358796..61358929 -
A13	chromosome	A13:92504393..92504542 -
CM017622.1	chromosome	CM017622.1:89959347..89959494 -
CM017648.1	chromosome	CM017648.1:94786655..94786808 -
CM017700.1	chromosome	CM017700.1:90499410..90499559 -
A13	chromosome	A13:90886351..90886512 -
Chr13	chromosome	Chr13:95770708..95770874 -
Chr13	chromosome	Chr13:99908221..99908407 -

Publications


Year	Publication
2009	Xiao J, Wu K, Fang DD, Stelly DM, Yu J, Cantrell RG. New SSR Markers for Use in Cotton (Gossypium spp.) Improvement. Journal of cotton science. 2009; 13(2):75-157

Germplasm


Stock Name	Type
Deltapine 20	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
MONCS1390	MONCS1390	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	TM-1 x 3-79, RIL (2014)	AD_ch13_At.13	N/A	75.1	COT009	View
2	GX1135 x GX100-2, F2 (2013)	AD_ch13_At.13	N/A	96.3	COT009	View
3	0-153 x sGK9708, RIL (2016)	AD_ch13_At.13	N/A	46.7	COT009	View
4	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch13_At.13	N/A	81.5	COT009	View
5	CCRI-35 x Yumian-1, RIL (2015)	AD_ch13_At.13	N/A	98.5	COT009	View
6	Monsanto SSR Bin Map, (2009)	AD_ch13_At.13	N/A	81	COT009	View
7	LMY22 x LY343, RIL (2020)	A13	N/A	56.38	COT009	View
8	(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)	AD_ch13_At.13	N/A	37.5	MON_COT009	View
9	CCRI-35 x Yumian-1, RIL (2017)	AD_ch13_At.13	N/A	44.32	COT009	View
10	TM-1 x 3-79, RIL (2012.v3)	AD_ch13_At.13	N/A	75.11	COT009	View
11	TM-1 x Hai-7124, BC1 (2012)	AD_ch13_At.13	N/A	82.2	cot009-150	View

Sequence

>COT009 ID=COT009; Name=COT009; organism=Gossypium hirsutum; type=genetic_marker; length=152bp
CAACCGTTTGAACACTTGTAACATCTATAGCCATCAAGTATCATCCAACC
ATCAAACAATTCATAACACAAGGCATAAACACACACACACACACACACAC
ACATATATATACATAATTCAACATGTCAAAATAGACCAAAATATGCCATC
AC

Search form

COT009, COT009 (genetic_marker) Gossypium hirsutum