CIR0416, CIR0416 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0416
AliasCIR416
Genbank IDAJ567340
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567340
Source Typegenomic
Repeat Motif(TG)11
PCR ConditionAnnealing temperature: 51
Primer 1CIR416_F: TATATGTGTGTGTGTGTG
Primer 2CIR416_R: TTCTTCCCTCTATTTTCTTT
Product Length233
PolymorphismP_ CIR0416
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567340
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567340AJ567340Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch11_At.11N/A217CIR416View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch11_At.11N/A208.94CIR416View
3AD-genome wide Reference Map (2009)AD_ch11_At.11N/A217cir0416View
Sequence
>CIR0416 ID=CIR0416; Name=CIR0416; organism=Gossypium hirsutum; type=genetic_marker; length=233bp
TATATGTGTGTGTGTGTGTGTGTGTGGAGCCCATGAATGCCCGTATTCAT
TTGCTGGCTATGCCCATCATTCAGCATCGCTTGCTTGTTCGTTTTCTTTT
ATATAAGCCTTTCGTCTACGGAGAAAGACCGAACACCCAGTTTCATTTTA
TATACTTTCTATTTCACACTGATTCTTAATTCCTCCCACTCTTATCTTCT
TGTATTTACTTGCAAAGAAAATAGAGGGAAGAA