CIR0408, CIR0408 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0408
AliasCIR408
Genbank IDAJ567332
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567332
Source Typegenomic
Repeat Motif(CA)21
PCR ConditionAnnealing temperature: 46
Primer 1CIR408_F: TTTTCACACACACACAC
Primer 2CIR408_R: GATCATACATGCACAAA
Product Length129
PolymorphismP_ CIR0408
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ghir_A08chromosomeGhir_A08:88878298..88878426 -
A08chromosomeA08:88896157..88896285 -
CM017695.1chromosomeCM017695.1:86657797..86657925 -
scaffold197supercontigCIR0408:1..161 .
scaffold197:56504..56662 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567332AJ567332Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch21_Dt.11N/A109.5CIR408bView
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch21_Dt.11N/A73.14CIR408View
3HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch08_At.08N/A2CIR408-126View
4AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A180cir0408View
Sequence
>CIR0408 ID=CIR0408; Name=CIR0408; organism=Gossypium hirsutum; type=genetic_marker; length=129bp
TTTTCACACACACACACACACACACACACACACACACACACACACATATA
CACACAATACACACTGACCTTCCATCAATGGCTTATTGGTTAGGTATTTT
CTCTTTCAATTTTTTGTGCATGTATGATC