CIR0398, CIR0398 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0398
AliasCIR398
Genbank IDAJ567322
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567322
Source Typegenomic
Repeat Motif(ACAT)5(CA)7
PCR ConditionAnnealing temperature: 50
Primer 1CIR398_F: ATACATACACACACACACACA
Primer 2CIR398_R: GAGGGAGAAACAGAAGAG
Product Length202
PolymorphismP_ CIR0398
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567322
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567322AJ567322Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch21_Dt.11N/A81.3CIR398View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch21_Dt.11N/A109.5CIR398View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch15_Dt.01N/A62.5CIR398View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A97CIR398View
5Guazuncho-2 x VH8-4602, consensus (2009)AD_ch21_Dt.11N/A70.25CIR398View
6Guazuncho-2 x VH8-4602, RIL (2009)AD_ch21_Dt.11N/A51.35CIR398View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch21_Dt.11N/A15.8CIR398View
8Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch15_Dt.01N/A81.8CIR398vView
9Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A114.5CIR398uView
10AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A184cir0398View
11AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A67cir0398View
12AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A180cir0398View
Sequence
>CIR0398 ID=CIR0398; Name=CIR0398; organism=Gossypium hirsutum; type=genetic_marker; length=202bp
ATACATACACACACACACACACATACATACATACATACATACAAACAAAT
TAATTGCACACAATACAATCTAAGCACCTTTTTCTTTTTCTTTTTTGCTG
TTCCAGGGCTTGAGCACAGCAAGTGCAATAATTACAAAAATTATGAGAAC
GAGTATAACTGCAATGCACCTCCACTTCCTGTTGCTCTTCTGTTTCTCCC
TC