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Marker Overview
| Name | CIR0381 |
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| Alias | CIR381
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| Genbank ID | AJ567309 |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Guazuncho-2 |
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| Source Sequence | AJ567309
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| Source Type | genomic |
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| Repeat Motif | (AC)7 |
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| PCR Condition | Annealing temperature: 51 |
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| Primer 1 | CIR381_F: TTTCCATCCTTTTGTGA |
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| Primer 2 | CIR381_R: AAGGAGAAGAACAAGCAA |
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| Product Length | 266 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2005 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch04_At.04 | N/A | 24.8 | CIR381 | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch02_At.02 | N/A | 29.71 | CIR381 | View |
| 3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch14_Dt.02 | N/A | 23.04 | CIR381 | View |
| 4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch02_At.02 | N/A | 0 | CIR381 | View |
| 5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch14_Dt.02 | N/A | 25.16 | CIR381 | View |
| 6 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch02_At.02 | N/A | 0 | CIR381 | View |
| 7 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch02_At.02 | N/A | 0 | CIR381a | View |
| 8 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch14_Dt.02 | N/A | 16.3 | CIR381b | View |
| 9 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch14_Dt.02 | N/A | 13.4 | CIR381b | View |
| 10 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch14_Dt.02 | N/A | 10 | CIR381-243 | View |
| 11 | AD-genome wide Reference Map (2009) | AD_ch14_Dt.02 | N/A | 41 | cir0381 | View |
| 12 | AD-genome wide Reference Map (2009) | AD_ch04_At.04 | N/A | 23 | cir0381 | View |
| 13 | AD-genome wide Reference Map (2009) | AD_ch02_At.02 | N/A | 174 | cir0381 | View |
| 14 | MGG-293-793, MAGIC (2018) | AD_ch02_At.02 | N/A | 38.9 | CIR381 | View |
Sequence
>CIR0381 ID=CIR0381; Name=CIR0381; organism=Gossypium hirsutum; type=genetic_marker; length=266bp
TTTCCATCCTTTTGTGAAAACAACTTCCAAAAATAATTATTAAACTAGGA
AATAAATAAAAGTACTTACCATTTACACACTTTTCCCAAAGAAAATTACA
AAGAAAATCATCAGTTTATCACTATGAATACCATCATCACTCGAGCACAA
AATTACTCATCTCTCTCACATATCATTTTCTCTCAAATTCCACTCATTAA
AACACATACACACACACACACAATGAAAACCCTTTCATTTTCTGTCATTT
GCTTGTTCTTCTCCTT
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