CIR0369, CIR0369 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0369
AliasCIR369
Genbank IDAJ567299
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567299
Source Typegenomic
Repeat Motif(AC)9(A)8
PCR ConditionAnnealing temperature: 51
Primer 1CIR369_F: GTTTGGTAAAAGCCAGTT
Primer 2CIR369_R: TTGCTTTGTGTTCCCT
Product Length202
PolymorphismP_ CIR0369
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:26722828..26723035 +
A10chromosomeA10:67002671..67002870 -
CM018211.1chromosomeCM018211.1:67066973..67067172 -
D5_10chromosomeD5_10:36857058..36857266 -
KI_10chromosomeKI_10:32411626..32411830 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:85545566..85545764 -
D10_10chromosomeD10_10:38352185..38352391 -
CM016623.1chromosomeCM016623.1:56911977..56912191 +
Dt_chr11chromosomeDt_chr11:25032041..25032248 -
At_chr11chromosomeAt_chr11:33882735..33882936 -
D10chromosomeD10:25487568..25487775 +
A10chromosomeA10:59404443..59404642 -
Ghir_D10chromosomeGhir_D10:25465262..25465469 +
Ghir_A10chromosomeGhir_A10:70912341..70912540 -
D10chromosomeD10:24754229..24754436 +
A10chromosomeA10:72447511..72447710 -
D10chromosomeD10:25626980..25627187 +
A10chromosomeA10:70682367..70682568 -
D10chromosomeD10:25593125..25593332 +
A10chromosomeA10:66327748..66327947 -
At10chromosomeAt10:61222828..61223027 -
scaffold29828supercontigscaffold29828:14264..14463 -
Gbar_A10chromosomeGbar_A10:67417222..67417421 -
A10chromosomeA10:68935768..68935967 -
CM017632.1chromosomeCM017632.1:25159174..25159376 +
CM017619.1chromosomeCM017619.1:68195855..68196054 -
CM017658.1chromosomeCM017658.1:25674276..25674483 +
CM017645.1chromosomeCM017645.1:74049240..74049439 -
CM017697.1chromosomeCM017697.1:69955975..69956174 -
D10chromosomeD10:25794444..25794650 +
A10chromosomeA10:73734069..73734268 -
Chr10chromosomeChr10:36462853..36463050 -
Chr10chromosomeChr10:42459942..42460140 +
Chr10chromosomeChr10:25335110..25335318 +
Chr11chromosomeChr11:40619158..40619364 -
Chr_11chromosomeChr_11:18271347..18271651 +
Chr11chromosomeChr11:25578820..25579022 +
Chr11chromosomeChr11:20075400..20075669 +
Chr11chromosomeChr11:15554798..15554997 +
Chr11chromosomeChr11:20001531..20001842 +
F10chromosomeF10:34897804..34898015 +
Chr10chromosomeChr10:96439390..96439595 +
Chr11chromosomeCIR0369:1..503 .
Chr11:25239906..25240413 +
scaffold324supercontigCIR0369:1..503 .
scaffold324:654640..655150 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567299AJ567299Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Texas-701, F2 (2007)AD_ch10_At.10N/A26.3CIR369-197View
2HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch10_At.10N/A5CIR369-195View
Sequence
>CIR0369 ID=CIR0369; Name=CIR0369; organism=Gossypium hirsutum; type=genetic_marker; length=202bp
GTTTGGTAAAAGCCAGTTATAGCTCCACCTTGTTATCAGAGCTCAGGAAA
GAATAACTATGAAGTGTAACAAATAAAAGACAGCAGCAAAACACACACAC
ACACACAAAAAAAATAAATAAATAAAGAATATCAAATTCTTAGTTTACAA
ATGCTTCAAATAAGAAAAGGACAATGAATGCATGATAGGGAACACAAAGC
AA