|
Marker Overview
Name | CIR0343 |
Alias | CIR343
|
Genbank ID | AJ567280 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567280
|
Source Type | genomic |
Repeat Motif | (TG)4(N)1(GT)5 |
PCR Condition | Annealing temperature: 51 |
Primer 1 | CIR343_F: CCAACAAGACCGACA |
Primer 2 | CIR343_R: GAGGGTGAAAGAGAGAGA |
Product Length | 235 |
Polymorphism | P_ CIR0343 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch08_At.08 | N/A | 152.9 | CIR343 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch24_Dt.08 | N/A | 102.03 | CIR343 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch08_At.08 | N/A | 158.5 | CIR343 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch24_Dt.08 | N/A | 83.07 | CIR343 | View |
5 | TM-1 x 3-79, RIL (2006) | AD_ch08_At.08 | N/A | 22.5 | CIR343 | View |
6 | TM-1 x 3-79, RIL (2012) | AD_ch08_At.08 | N/A | 26.01 | CIR343 | View |
7 | Emian-22 x 3-79, BC1 (2011) | AD_ch08_At.08 | N/A | 125.71 | CIR343 | View |
8 | TM-1 x 3-79, RIL (2014) | AD_ch08_At.08 | N/A | 37.3 | CIR343 | View |
9 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch08_At.08 | N/A | 82.9 | CIR343 | View |
10 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch08_At.08 | N/A | 214.3 | CIR343b | View |
11 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch24_Dt.08 | N/A | 138.1 | CIR343a | View |
12 | AD-genome wide Reference Map (2009) | AD_ch08_At.08 | N/A | 212 | cir0343 | View |
13 | AD-genome wide Reference Map (2009) | AD_ch24_Dt.08 | N/A | 38 | cir0343 | View |
14 | TM-1 x Hai-7124, BC1 (2007) | AD_ch08_At.08 | N/A | 38.6 | CIR343-220 | View |
15 | TM-1 x Hai-7124, BC1 (2008) | AD_ch08_At.08 | N/A | 88.51 | CIR343-220 | View |
16 | TM-1 x Hai-7124, BC1 (2012) | AD_ch08_At.08 | N/A | 44.6 | CIR343-220 | View |
17 | TM-1 x 3-79, RIL (2012.v3) | AD_ch08_At.08 | N/A | 37.29 | CIR343 | View |
18 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch08_At.08 | N/A | 97 | CIR343 | View |
Sequence
>CIR0343 ID=CIR0343; Name=CIR0343; organism=Gossypium hirsutum; type=genetic_marker; length=235bp CCAACAAGACCGACAATTATGTGGCTTTTAAGGTAATCATGCTGATTCTC AAATTAAATTTGGATTTTTTTTCTAATTTAAGGAGACTTTGGTTCTATAT TGTGTGTGCGTGTGTGTGTTTCATTTTTTTGCAGGTCAAAACGACAAATC CAAAGAAGTACTGTGTAAGGCCAAATACTGGAGTTGTGCTGCCTAGGTCT ACGTGCAACGTTGTTGGTCTCTCTCTTTCACCCTC
|