|
Marker Overview
Name | CIR0342 |
Alias | CIR342
|
Genbank ID | AJ567279 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567279
|
Source Type | genomic |
Repeat Motif | (AC)8(AT)5 |
PCR Condition | Annealing temperature: 51 |
Primer 1 | CIR342_F: CTGGGTTTCTTTGGTG |
Primer 2 | CIR342_R: TGCTGGGAAGATGTAAG |
Product Length | 173 |
Polymorphism | P_ CIR0342 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch13_At.13 | N/A | 92.4 | CIR342 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch13_At.13 | N/A | 101 | CIR342 | View |
3 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch13_At.13 | N/A | 46.15 | CIR342 | View |
4 | TM-1 x 3-79, RIL (2012) | AD_ch13_At.13 | N/A | 58.96 | CIR342 | View |
5 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch13_At.13 | N/A | 162.1 | CIR342 | View |
6 | H18 x TM-1, F2 (2005) | AD_ch13_At.13 | N/A | 56.3 | CIR342 | View |
7 | TM-1 x 3-79, RIL (2014) | AD_ch13_At.13 | N/A | 55.2 | CIR342 | View |
8 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch13_At.13 | N/A | 59.2 | CIR342 | View |
9 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch13_At.13 | N/A | 107.9 | CIR342 | View |
10 | Deltapine-61 x Texas-701, F2 (2007) | AD_ch13_At.13 | N/A | 0 | CIR342-163 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch13_At.13 | N/A | 154 | cir0342 | View |
12 | TM-1 x Hai-7124, BC1 (2007) | AD_ch13_At.13 | N/A | 66.6 | CIR342-250 | View |
13 | TM-1 x Hai-7124, BC1 (2008) | AD_ch13_At.13 | N/A | 66.65 | CIR342-250 | View |
14 | TM-1 x Hai-7124, BC1 (2012) | AD_ch13_At.13 | N/A | 71.2 | CIR342-250 | View |
15 | TM-1 x 3-79, RIL (2012.v3) | AD_ch13_At.13 | N/A | 55.17 | CIR342 | View |
Sequence
>CIR0342 ID=CIR0342; Name=CIR0342; organism=Gossypium hirsutum; type=genetic_marker; length=173bp CTGGGTTTCTTTGGTGGATTTGGCTTTGTTCCCACTTCATATTTTGTAAG CAACACACACACACACACATATATATATAAACATATATGACTGATTTCAA TTCAGTATTGCTATCTGCAACTCACTTAAATCTATATCTGTCATCAAAAT TTTTGGCTTACATCTTCCCAGCA
|