CIR0332, CIR0332 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0332
AliasCIR332
Genbank IDAJ567269
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567269
Source Typegenomic
Repeat Motif(TG)8
PCR ConditionAnnealing temperature: 51
Primer 1CIR332_F: CTACGCATGAGACGATAC
Primer 2CIR332_R: CAACGCCAATAACAATAC
Product Length167
PolymorphismP_ CIR0332
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567269
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567269AJ567269Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch03_At.03N/A37.4CIR332View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch03_At.03N/A95.8CIR332View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A74CIR332View
4TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A36.86CIR332View
5Zhongmiansuo-12 x 8891, RIL (2007)AD_ch03_At.03N/A1.6CIR332View
6T582 x Hai-7124, F2 (2010)AD_ch03_At.03N/A53.3CIR332View
7TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A79.5CIR332View
8AD-genome wide Reference Map (2009)AD_ch03_At.03N/A169cir0332View
9TM-1 x Hai-7124, BC1 (2007)AD_ch03_At.03N/A53.3CIR332-330View
10TM-1 x Hai-7124, BC1 (2008)AD_ch03_At.03N/A52.87CIR332-330View
11TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A49.8CIR332-330View
12TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A79.51CIR332View
13PD 94042 x (AD)4-08, F2 (2016)AD_ch03_At.03N/A88.7CIR332View
Sequence
>CIR0332 ID=CIR0332; Name=CIR0332; organism=Gossypium hirsutum; type=genetic_marker; length=167bp
CTACGCATGAGACGATACTTGGAGTTTCTTAGTGTCTGCTATATTATTTT
GGTGCCAATATTATACAATTATAAGGTGTTTTGTGCTTATGTGTGTGTGT
GTGTGCGGGCGCGCGCTTAATTTCATCCGAGTTTGTGTATTATGTATCTG
TATTGTTATTGGCGTTG