CIR0316, CIR0316 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0316
AliasCIR316
Genbank IDAJ567257
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567257
Source Typegenomic
Repeat Motif(AC)8(AT)5
PCR ConditionAnnealing temperature: 51
Primer 1CIR316_F: TTACAGGCACTACCACC
Primer 2CIR316_R: CCTTTCTGGCGACTT
Product Length197
PolymorphismP_ CIR0316
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567257
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567257AJ567257Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch21_Dt.11N/A15.2CIR316View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch21_Dt.11N/A14.88CIR316View
3Yumian-1 x T586, RIL (2015)AD_ch11_At.11N/A115.8CIR316View
4Yumian-1 x T586, RIL (2006)AD_ch11_At.11N/A33.2CIR316View
5AD-genome wide Reference Map (2009)AD_ch11_At.11N/A1cir0316View
6AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A11cir0316View
7TM-1 x 3-79, RIL (2006)AD_ch11_At.11N/A0CIR316aView
8TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A155.98CIR316aView
9NemX x SJ-2, RIL (2005)AD_ch11_At.11N/A0CIR316aView
10TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A159.5CIR316aView
11TM-1 x 3-79, RIL (2006)AD_chUN/A0CIR316bView
12TM-1 x 3-79, RIL (2012)AD_ch21_Dt.11N/A128CIR316bView
13TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A141CIR316bView
14TM-1 x 3-79, RIL (2006)AD_chUN/A10.5CIR316cView
15Yumian-1 x T586, RIL (2009)AD_ch11_At.11N/A33.2CIR316/210t(C21)View
16ST-474 x Auburn 634 RNR, F2 (2007)AD_ch11_At.11N/A83.8CIR-316View
17GB713 x Nem-X, F2 (2011)AD_ch21_Dt.11N/A206.4CIR316ND_184View
18TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A159.51CIR316aView
19TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A140.97CIR316bView
Sequence
>CIR0316 ID=CIR0316; Name=CIR0316; organism=Gossypium hirsutum; type=genetic_marker; length=197bp
TTACAGGCACTACCACCAAAAATCTCAGATAAGTAAAACAAAAAGCAACA
AAACAAGAAATCACCTAAAAGTTAAGACACACAGACACAAAAATACGGAT
AAATGTACATATTAAAATCCGTATGTATACACACACACACACACATATAT
ATATTTGAATTACTCCACCGTCGAATGTGGTGAAGTCGCCAGAAAGG