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Marker Overview
Name | CIR0316 |
Alias | CIR316
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Genbank ID | AJ567257 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567257
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Source Type | genomic |
Repeat Motif | (AC)8(AT)5 |
PCR Condition | Annealing temperature: 51 |
Primer 1 | CIR316_F: TTACAGGCACTACCACC |
Primer 2 | CIR316_R: CCTTTCTGGCGACTT |
Product Length | 197 |
Polymorphism | P_ CIR0316 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch21_Dt.11 | N/A | 15.2 | CIR316 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch21_Dt.11 | N/A | 14.88 | CIR316 | View |
3 | Yumian-1 x T586, RIL (2015) | AD_ch11_At.11 | N/A | 115.8 | CIR316 | View |
4 | Yumian-1 x T586, RIL (2006) | AD_ch11_At.11 | N/A | 33.2 | CIR316 | View |
5 | AD-genome wide Reference Map (2009) | AD_ch11_At.11 | N/A | 1 | cir0316 | View |
6 | AD-genome wide Reference Map (2009) | AD_ch21_Dt.11 | N/A | 11 | cir0316 | View |
7 | TM-1 x 3-79, RIL (2006) | AD_ch11_At.11 | N/A | 0 | CIR316a | View |
8 | TM-1 x 3-79, RIL (2012) | AD_ch11_At.11 | N/A | 155.98 | CIR316a | View |
9 | NemX x SJ-2, RIL (2005) | AD_ch11_At.11 | N/A | 0 | CIR316a | View |
10 | TM-1 x 3-79, RIL (2014) | AD_ch11_At.11 | N/A | 159.5 | CIR316a | View |
11 | TM-1 x 3-79, RIL (2006) | AD_chU | N/A | 0 | CIR316b | View |
12 | TM-1 x 3-79, RIL (2012) | AD_ch21_Dt.11 | N/A | 128 | CIR316b | View |
13 | TM-1 x 3-79, RIL (2014) | AD_ch21_Dt.11 | N/A | 141 | CIR316b | View |
14 | TM-1 x 3-79, RIL (2006) | AD_chU | N/A | 10.5 | CIR316c | View |
15 | Yumian-1 x T586, RIL (2009) | AD_ch11_At.11 | N/A | 33.2 | CIR316/210t(C21) | View |
16 | ST-474 x Auburn 634 RNR, F2 (2007) | AD_ch11_At.11 | N/A | 83.8 | CIR-316 | View |
17 | GB713 x Nem-X, F2 (2011) | AD_ch21_Dt.11 | N/A | 206.4 | CIR316ND_184 | View |
18 | TM-1 x 3-79, RIL (2012.v3) | AD_ch11_At.11 | N/A | 159.51 | CIR316a | View |
19 | TM-1 x 3-79, RIL (2012.v3) | AD_ch21_Dt.11 | N/A | 140.97 | CIR316b | View |
Sequence
>CIR0316 ID=CIR0316; Name=CIR0316; organism=Gossypium hirsutum; type=genetic_marker; length=197bp TTACAGGCACTACCACCAAAAATCTCAGATAAGTAAAACAAAAAGCAACA AAACAAGAAATCACCTAAAAGTTAAGACACACAGACACAAAAATACGGAT AAATGTACATATTAAAATCCGTATGTATACACACACACACACACATATAT ATATTTGAATTACTCCACCGTCGAATGTGGTGAAGTCGCCAGAAAGG
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