CIR0311, CIR0311 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0311
AliasCIR311
Genbank IDAJ567252
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567252
Source Typegenomic
Repeat Motif(AC)17
PCR ConditionAnnealing temperature: 51
Primer 1CIR311_F: CCTTGTGAAGAGAGGGT
Primer 2CIR311_R: GGTGCTAGATTTGTCAGTC
Product Length183
PolymorphismP_ CIR0311
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:5729398..5729579 +
At_chr3chromosomeAt_chr3:93122746..93122927 +
D01chromosomeD01:5396288..5396469 +
D01chromosomeD01:6450800..6450981 +
D01chromosomeD01:6014754..6014935 +
D01chromosomeD01:6450594..6450775 +
D01chromosomeD01:6701176..6701357 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567252AJ567252Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch15_Dt.01N/A142CIR311View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch15_Dt.01N/A101.35CIR311View
3TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A34CIR311View
4CCRI-36 x Hai-7124, F2 (2007)AD_ch15_Dt.01N/A135.5CIR311View
5Yumian-1 x T586, RIL (2006)AD_ch15_Dt.01N/A0CIR311View
6Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A37.4CIR311View
7TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A85.9CIR311View
8AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A164cir0311View
9Yumian-1 x T586, RIL (2009)AD_ch15_Dt.01N/A0CIR311/200y(C15)View
10TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A85.89CIR311View
Sequence
>CIR0311 ID=CIR0311; Name=CIR0311; organism=Gossypium hirsutum; type=genetic_marker; length=183bp
CCTTGTGAAGAGAGGGTGATGCTATCTGGAATGCATACTGTGGCTGATAT
ATTTTGCTGCTGTTGTGGACAGATTGTTGGCTGGAAATACGTAATTCCCC
TGTCTTAAACACACACACACACACACACACACACACACACACATTTATTC
GGATAATTCAAGATGACTGACAAATCTAGCACC